Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 4.7e-91 337.8 165 100.0
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 3.9e-29 132.1 145 51.7
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.4e-23 113.6 135 47.4
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 7.4e-20 101.3 89 59.6
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 5.5e-15 85.1 82 54.9
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 2.1e-14 83.2 85 54.1
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 7.9e-14 81.3 77 55.8
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.5e-12 77.0 76 50.0
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 3.3e-12 75.9 53 62.3
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 4.3e-12 75.5 87 47.1
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 8.1e-11 71.2 82 51.2
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 8.1e-11 71.2 134 38.1
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 1.1e-10 70.9 79 49.4
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.4e-10 70.5 134 38.1
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 3.1e-10 69.3 82 50.0
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.0e-10 68.9 129 33.3
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 6.9e-10 68.2 77 44.2
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.2e-09 67.4 77 44.2
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 1.5e-09 67.0 66 50.0
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 2.0e-09 66.6 80 48.8
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 3.4e-09 65.9 68 52.9
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.5e-09 65.5 84 44.0
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 5.8e-09 65.1 69 47.8
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 7.6e-09 64.7 74 45.9
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 1.7e-08 63.5 118 30.5
Potri.002G159100 Populus trichocarpa HOM05D006065 ORTHO05D007672 2.2e-08 63.2 68 44.1
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 2.2e-08 63.2 70 51.4
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 2.9e-08 62.8 85 42.4
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 3.8e-08 62.4 78 46.2
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 4.9e-08 62.0 84 41.7
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 4.9e-08 62.0 118 34.7
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 4.9e-08 62.0 76 47.4
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 4.9e-08 62.0 70 50.0
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 6.5e-08 61.6 72 51.4
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 1.4e-07 60.5 69 49.3
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 1.4e-07 60.5 70 51.4
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 1.4e-07 60.5 121 32.2
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.9e-07 60.1 66 50.0
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 2.5e-07 59.7 66 50.0
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 2.5e-07 59.7 107 31.8
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 2.5e-07 59.7 107 31.8
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 3.2e-07 59.3 59 55.9
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 3.2e-07 59.3 83 41.0
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 4.2e-07 58.9 139 32.4
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 4.2e-07 58.9 71 45.1
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 7.1e-07 58.2 122 33.6
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 9.3e-07 57.8 123 34.1
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 9.3e-07 57.8 63 52.4
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 1.2e-06 57.4 84 36.9
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 1.6e-06 57.0 60 51.7
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 2.1e-06 56.6 44 61.4
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 2.1e-06 56.6 46 58.7
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 2.1e-06 56.6 120 32.5
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 2.1e-06 56.6 66 47.0
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 2.7e-06 56.2 44 61.4
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 2.7e-06 56.2 72 47.2
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 2.7e-06 56.2 79 38.0
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 3.5e-06 55.8 73 43.8
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 3.5e-06 55.8 53 54.7
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 3.5e-06 55.8 44 65.9
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 6.0e-06 55.1 62 50.0
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 7.9e-06 54.7 57 49.1
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 7.9e-06 54.7 131 31.3
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 7.9e-06 54.7 90 36.7


User provided reference genes

Program Settings