Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 6.8e-34 146.7 73 100.0
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 6.6e-13 77.0 44 79.5
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 8.6e-13 76.6 44 79.5
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 8.6e-13 76.6 44 79.5
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 8.6e-13 76.6 44 79.5
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.1e-12 76.3 44 79.5
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 1.1e-12 76.3 44 79.5
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.1e-12 76.3 44 79.5
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.9e-12 75.5 44 79.5
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.9e-12 75.5 44 79.5
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.9e-12 75.5 44 81.8
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 2.5e-12 75.1 44 79.5
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 2.5e-12 75.1 44 79.5
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 2.5e-12 75.1 44 79.5
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.3e-12 74.7 44 79.5
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 3.3e-12 74.7 44 79.5
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 4.3e-12 74.3 44 77.3
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 4.3e-12 74.3 44 79.5
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 4.3e-12 74.3 45 77.8
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.3e-12 74.3 45 77.8
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 4.3e-12 74.3 44 77.3
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 5.6e-12 73.9 44 79.5
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 5.6e-12 73.9 44 75.0
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 5.6e-12 73.9 44 77.3
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 7.3e-12 73.6 49 69.4
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 7.3e-12 73.6 44 79.5
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 7.3e-12 73.6 44 79.5
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 7.3e-12 73.6 44 79.5
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 7.3e-12 73.6 44 81.8
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 7.3e-12 73.6 41 80.5
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 7.3e-12 73.6 44 77.3
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 9.5e-12 73.2 44 77.3
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 9.5e-12 73.2 44 77.3
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 9.5e-12 73.2 44 77.3
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 9.5e-12 73.2 44 77.3
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 9.5e-12 73.2 44 79.5
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 9.5e-12 73.2 44 77.3
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 1.2e-11 72.8 44 77.3
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.2e-11 72.8 44 77.3
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.2e-11 72.8 44 77.3
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 1.2e-11 72.8 44 79.5
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 1.6e-11 72.4 44 77.3
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.6e-11 72.4 44 77.3
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 1.6e-11 72.4 44 75.0
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.6e-11 72.4 44 77.3
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 2.1e-11 72.0 44 77.3
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 2.1e-11 72.0 44 77.3
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 2.1e-11 72.0 44 75.0
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 2.1e-11 72.0 44 77.3
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 2.1e-11 72.0 44 77.3
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 2.8e-11 71.6 40 80.0
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.8e-11 71.6 44 79.5
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 2.8e-11 71.6 44 77.3
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 2.8e-11 71.6 42 76.2
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 3.6e-11 71.2 44 72.7
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 3.6e-11 71.2 44 72.7
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 3.6e-11 71.2 44 77.3
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.6e-11 71.2 44 75.0
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.6e-11 71.2 44 75.0
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.6e-11 71.2 44 75.0
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 3.6e-11 71.2 44 75.0
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 3.6e-11 71.2 44 77.3
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 4.7e-11 70.9 44 75.0
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 4.7e-11 70.9 44 79.5
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 4.7e-11 70.9 44 75.0
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 6.1e-11 70.5 44 75.0
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 6.1e-11 70.5 44 70.5
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 6.1e-11 70.5 44 77.3
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 6.1e-11 70.5 44 77.3
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 6.1e-11 70.5 44 75.0
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 6.1e-11 70.5 42 76.2
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 8.0e-11 70.1 44 72.7
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 8.0e-11 70.1 44 75.0
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 8.0e-11 70.1 44 75.0
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 8.0e-11 70.1 44 75.0
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 8.0e-11 70.1 44 75.0
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 8.0e-11 70.1 44 75.0
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 1.0e-10 69.7 44 75.0
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.0e-10 69.7 44 77.3
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 1.0e-10 69.7 44 75.0
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 1.0e-10 69.7 45 75.6
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 1.0e-10 69.7 44 70.5
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.4e-10 69.3 44 75.0
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 1.8e-10 68.9 41 78.0
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.8e-10 68.9 44 77.3
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.8e-10 68.9 44 77.3
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 1.8e-10 68.9 41 78.0
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 1.8e-10 68.9 44 72.7
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 1.8e-10 68.9 44 70.5
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 1.8e-10 68.9 44 70.5
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.8e-10 68.9 44 75.0
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 2.3e-10 68.6 44 72.7
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 2.3e-10 68.6 44 72.7
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 3.1e-10 68.2 44 72.7
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 3.1e-10 68.2 44 72.7
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 3.1e-10 68.2 44 75.0
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 4.0e-10 67.8 41 78.0
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 4.0e-10 67.8 44 72.7
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 4.0e-10 67.8 44 72.7
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 70.5
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 5.2e-10 67.4 44 75.0
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 6.8e-10 67.0 44 70.5
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 6.8e-10 67.0 44 70.5
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 6.8e-10 67.0 41 78.0
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 6.8e-10 67.0 44 72.7
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 6.8e-10 67.0 44 75.0
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 8.9e-10 66.6 44 70.5
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 8.9e-10 66.6 44 70.5
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 8.9e-10 66.6 44 70.5
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 8.9e-10 66.6 44 70.5
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 8.9e-10 66.6 42 76.2
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.2e-09 66.2 44 68.2
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 1.2e-09 66.2 44 68.2
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 1.2e-09 66.2 44 70.5
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 1.2e-09 66.2 44 72.7
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 1.2e-09 66.2 44 72.7
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 1.2e-09 66.2 44 75.0
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 1.2e-09 66.2 44 72.7
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 1.5e-09 65.9 44 68.2
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 1.5e-09 65.9 44 68.2
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 2.0e-09 65.5 42 73.8
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 2.0e-09 65.5 42 73.8
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 2.0e-09 65.5 44 68.2
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 2.0e-09 65.5 44 70.5
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 2.0e-09 65.5 44 72.7
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 2.0e-09 65.5 41 73.2
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 2.0e-09 65.5 41 73.2
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 3.4e-09 64.7 44 65.9
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 3.4e-09 64.7 44 65.9
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 3.4e-09 64.7 44 68.2
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 4.4e-09 64.3 47 68.1
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 5.8e-09 63.9 69 47.8
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 7.5e-09 63.5 44 68.2
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 9.8e-09 63.2 44 65.9
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.3e-08 62.8 42 66.7
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 2.2e-08 62.0 44 65.9
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 2.2e-08 62.0 44 68.2
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 2.9e-08 61.6 42 69.0
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 2.9e-08 61.6 64 54.7
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 3.7e-08 61.2 44 68.2
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 6.4e-08 60.5 42 66.7
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.1e-07 59.7 43 65.1
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 5.4e-07 57.4 41 65.9
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 2.0e-06 55.5 43 58.1
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 2.7e-06 55.1 44 63.6
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 3.5e-06 54.7 67 44.8
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 3.5e-06 54.7 42 57.1
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 3.5e-06 54.7 41 58.5
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 4.6e-06 54.3 41 58.5
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 4.6e-06 54.3 44 68.2


User provided reference genes

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