Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0959 Trochodendron aralioides HOM05D002316 ORTHO05D002280 1.5e-215 752.7 397 100.0
Dinv37816 Davidia involucrata HOM05D002316 ORTHO05D002280 8.0e-113 411.4 412 60.7
GSVIVG01016660001 Vitis vinifera HOM05D002316 ORTHO05D002280 5.9e-108 395.2 400 61.2
Nn6g35747 Nelumbo nucifera HOM05D002316 ORTHO05D002280 2.8e-105 386.3 394 59.6
MBI19_g32879_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 4.4e-103 379.0 404 59.7
QL05p001077 Quercus lobata HOM05D002316 ORTHO05D002280 8.3e-102 374.8 397 57.9
Dinv20376 Davidia involucrata HOM05D002316 ORTHO05D002280 1.2e-100 370.9 415 57.1
QL05p000933 Quercus lobata HOM05D002316 ORTHO05D002280 2.7e-100 369.8 397 57.2
CSS0017215 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 5.6e-98 362.1 400 56.8
CiPaw.02G130400 Carya illinoinensis HOM05D002316 ORTHO05D002280 1.6e-97 360.5 399 55.6
Aqoxy7G00923 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 4.7e-97 359.0 402 56.0
Cpa.g.sc25.201 Carica papaya HOM05D002316 ORTHO05D002280 8.3e-94 348.2 415 52.8
Thecc.06G131100 Theobroma cacao HOM05D002316 ORTHO05D002280 1.4e-93 347.4 398 53.5
Duzib192G1048 Durio zibethinus HOM05D002316 ORTHO05D002280 5.4e-93 345.5 398 54.3
Duzib235G0584 Durio zibethinus HOM05D002316 ORTHO05D002280 1.6e-92 344.0 398 54.3
COL.COLO4_30878 Corchorus olitorius HOM05D002316 ORTHO05D002280 2.0e-92 343.6 400 51.8
Atru.chr1.4173 Acer truncatum HOM05D002316 ORTHO05D002280 7.8e-92 341.7 397 55.7
TAR624G0517 Trochodendron aralioides HOM05D002316 ORTHO05D002280 7.8e-92 341.7 453 51.2
MBI13_g41710_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.0e-91 341.3 400 52.5
Ciclev10025233m.g Citrus clementina HOM05D002316 ORTHO05D002280 1.3e-91 340.9 398 52.5
Gohir.A05G142100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.7e-91 340.5 398 53.5
Actinidia21843 Actinidia chinensis HOM05D002316 ORTHO05D002280 3.0e-91 339.7 407 53.3
Gorai.009G148300 Gossypium raimondii HOM05D002316 ORTHO05D002280 3.9e-91 339.3 397 53.1
Gohir.D10G050800 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.1e-90 337.8 396 51.8
Manes.04G151600 Manihot esculenta HOM05D002316 ORTHO05D002280 1.9e-90 337.0 397 53.7
Cfa003455 Carpinus fangiana HOM05D002316 ORTHO05D002280 1.1e-88 331.3 399 53.9
Gohir.A10G050200 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.8e-88 330.5 396 50.5
CANSAT56G3763 Cannabis sativa HOM05D002316 ORTHO05D002280 2.3e-88 330.1 407 52.8
CiPaw.01G210800 Carya illinoinensis HOM05D002316 ORTHO05D002280 2.6e-87 326.6 393 53.2
Eucgr.J02589 Eucalyptus grandis HOM05D002316 ORTHO05D002280 5.8e-87 325.5 401 52.9
PSO135G1018 Papaver somniferum HOM05D002316 ORTHO05D002280 3.2e-85 319.7 397 51.6
PSO724G1377 Papaver somniferum HOM05D002316 ORTHO05D002280 3.2e-85 319.7 401 51.1
Potri.003G073400 Populus trichocarpa HOM05D002316 ORTHO05D002280 3.2e-85 319.7 399 51.1
Potri.001G161900 Populus trichocarpa HOM05D002316 ORTHO05D002280 1.6e-84 317.4 402 50.7
TWI14G0140 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 1.0e-83 314.7 410 48.8
Glyma.03G262900 Glycine max HOM05D002316 ORTHO05D002280 2.3e-83 313.5 395 50.6
ClCG07G014240 Citrullus lanatus HOM05D002316 ORTHO05D002280 3.0e-83 313.2 400 49.8
Sabra01G0130600 Salix brachista HOM05D002316 ORTHO05D002280 8.6e-83 311.6 393 49.1
Actinidia24418 Actinidia chinensis HOM05D002316 ORTHO05D002280 4.3e-82 309.3 406 49.3
Sabra03G0044000 Salix brachista HOM05D002316 ORTHO05D002280 3.1e-80 303.1 400 49.0
Sed0002975 Sechium edule HOM05D002316 ORTHO05D002280 4.0e-80 302.8 407 48.4
MD17G1154900 Malus domestica HOM05D002316 ORTHO05D002280 6.8e-80 302.0 464 45.0
Lj5A28T49 Lonicera japonica HOM05D002316 ORTHO05D002280 1.2e-79 301.2 406 49.3
Lalb_Chr15g0076661 Lupinus albus HOM05D002316 ORTHO05D002280 1.5e-79 300.8 405 48.9
Nitab4.5_0006966g0030 Nicotiana tabacum HOM05D002316 ORTHO05D002280 2.6e-79 300.1 410 52.0
Nitab4.5_0006338g0020 Nicotiana tabacum HOM05D002316 ORTHO05D002280 3.4e-79 299.7 408 51.2
Gohir.D05G144400 Gossypium hirsutum HOM05D002316 ORTHO05D002280 7.6e-79 298.5 253 65.2
Cc04_g00630 Coffea canephora HOM05D002316 ORTHO05D002280 9.9e-79 298.1 422 47.9
Glyma.19G262000 Glycine max HOM05D002316 ORTHO05D002280 1.3e-78 297.7 402 49.0
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 3.7e-78 296.2 410 48.5
DCAR_016087 Daucus carota HOM05D002316 ORTHO05D002280 4.9e-78 295.8 422 48.3
PGSC0003DMG400009152 Solanum tuberosum HOM05D002316 ORTHO05D002280 4.9e-78 295.8 428 47.9
TWI59G0933 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 8.3e-78 295.0 407 47.4
Lj1g0006356 Lotus japonicus HOM05D002316 ORTHO05D002280 1.4e-77 294.3 399 48.1
Solyc03g123700.4 Solanum lycopersicum HOM05D002316 ORTHO05D002280 4.1e-77 292.7 421 48.0
Peaxi162Scf00038g02328 Petunia axillaris HOM05D002316 ORTHO05D002280 5.4e-77 292.4 417 47.0
MD09G1172000 Malus domestica HOM05D002316 ORTHO05D002280 7.1e-77 292.0 462 45.5
Migut.I01139 Erythranthe guttata HOM05D002316 ORTHO05D002280 9.2e-77 291.6 404 48.8
VMungo1309G0979 Vigna mungo HOM05D002316 ORTHO05D002280 2.7e-76 290.0 393 48.3
ATR0053G043 Amborella trichopoda HOM05D002316 ORTHO05D002280 3.5e-76 289.7 396 48.7
AUR62007994 Chenopodium quinoa HOM05D002316 ORTHO05D002280 3.5e-76 289.7 413 47.0
CAN.G790.53 Capsicum annuum HOM05D002316 ORTHO05D002280 4.6e-76 289.3 425 47.5
Sopen03g041470 Solanum pennellii HOM05D002316 ORTHO05D002280 6.0e-76 288.9 421 47.7
AUR62003176 Chenopodium quinoa HOM05D002316 ORTHO05D002280 1.7e-75 287.3 423 45.9
CsaV3_3G031100 Cucumis sativus L. HOM05D002316 ORTHO05D002280 5.1e-75 285.8 402 47.8
Thhalv10011340m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 5.1e-75 285.8 407 46.4
Oeu013438.1 Olea europaea HOM05D002316 ORTHO05D002280 5.1e-75 285.8 406 49.3
Prupe.3G030400 Prunus persica HOM05D002316 ORTHO05D002280 5.1e-75 285.8 465 46.2
arahy.Tifrunner.gnm1.ann1.82DMKZ Arachis hypogaea HOM05D002316 ORTHO05D002280 8.6e-75 285.0 400 46.8
PGR102G1833 Punica granatum HOM05D002316 ORTHO05D002280 1.5e-74 284.3 237 66.7
FAN02G0802 Fragaria x ananassa HOM05D002316 ORTHO05D002280 4.3e-74 282.7 280 61.8
FAN09G2036 Fragaria x ananassa HOM05D002316 ORTHO05D002280 9.6e-74 281.6 280 62.1
MELO3C026660.2 Cucumis melo HOM05D002316 ORTHO05D002280 1.2e-73 281.2 400 47.2
FAN14G1755 Fragaria x ananassa HOM05D002316 ORTHO05D002280 2.1e-73 280.4 280 61.8
FAN14G3860 Fragaria x ananassa HOM05D002316 ORTHO05D002280 2.8e-73 280.0 280 61.8
FAN05G5339 Fragaria x ananassa HOM05D002316 ORTHO05D002280 4.7e-73 279.3 280 61.4
Gorai.011G054500 Gossypium raimondii HOM05D002316 ORTHO05D002280 4.7e-73 279.3 396 46.7
EL10Ac6g14924 Beta vulgaris HOM05D002316 ORTHO05D002280 8.1e-73 278.5 428 45.3
Phvul.009G261100 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 1.1e-72 278.1 395 46.8
FvH4_6g35990 Fragaria vesca HOM05D002316 ORTHO05D002280 2.4e-72 276.9 280 61.4
arahy.Tifrunner.gnm1.ann1.JMV1FI Arachis hypogaea HOM05D002316 ORTHO05D002280 8.9e-72 275.0 304 54.9
AL1G62470 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 1.2e-71 274.6 405 45.4
Lalb_Chr04g0261261 Lupinus albus HOM05D002316 ORTHO05D002280 1.5e-71 274.2 400 46.5
vmacro18716 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.7e-70 270.8 431 45.0
Sp1g40300 Schrenkiella parvula HOM05D002316 ORTHO05D002280 6.4e-70 268.9 412 43.2
Sc15g0000830 Simmondsia chinensis HOM05D002316 ORTHO05D002280 6.4e-70 268.9 399 46.6
THA.LOC104810398 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 6.4e-70 268.9 425 43.8
BraA06t23311Z Brassica rapa HOM05D002316 ORTHO05D002280 8.4e-70 268.5 397 46.1
Carub.0001s4305 Capsella rubella HOM05D002316 ORTHO05D002280 1.1e-69 268.1 408 44.4
A06p00770 Brassica napus HOM05D002316 ORTHO05D002280 1.4e-69 267.7 397 46.1
AT1G53800 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 4.2e-69 266.2 410 43.2
Medtr7g117530 Medicago truncatula HOM05D002316 ORTHO05D002280 1.2e-68 264.6 401 45.6
BcaC08g43557 Brassica carinata HOM05D002316 ORTHO05D002280 1.6e-68 264.2 396 44.9
C06p09560 Brassica napus HOM05D002316 ORTHO05D002280 2.1e-68 263.8 398 45.0
BolC6t36030H Brassica oleracea HOM05D002316 ORTHO05D002280 2.1e-68 263.8 398 45.0
TPR.G28875 Trifolium pratense HOM05D002316 ORTHO05D002280 2.1e-68 263.8 402 46.3
Ca_09566_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 2.7e-68 263.5 399 45.9
BcaB07g33301 Brassica carinata HOM05D002316 ORTHO05D002280 2.3e-67 260.4 402 45.3
DCAR_022638 Daucus carota HOM05D002316 ORTHO05D002280 2.3e-67 260.4 419 44.9
CDE10G1231 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 1.1e-66 258.1 247 61.5
BcaC08g44130 Brassica carinata HOM05D002316 ORTHO05D002280 2.5e-66 256.9 406 43.6
C06p15300 Brassica napus HOM05D002316 ORTHO05D002280 2.5e-66 256.9 406 43.6
unitig_32.g10996 Utricularia gibba HOM05D002316 ORTHO05D002280 2.5e-66 256.9 407 44.0
Ah.03g139400 Amaranthus hybridus HOM05D002316 ORTHO05D002280 3.3e-66 256.5 406 45.6
Aa31LG10G1510 Aethionema arabicum HOM05D002316 ORTHO05D002280 4.3e-66 256.1 403 42.4
Eucgr.I02167 Eucalyptus grandis HOM05D002316 ORTHO05D002280 5.6e-66 255.8 396 43.2
RcHm_v2.0_Chr2g0148111 Rosa chinensis HOM05D002316 ORTHO05D002280 7.3e-66 255.4 278 58.3
BolC6t36705H Brassica oleracea HOM05D002316 ORTHO05D002280 1.3e-65 254.6 406 43.3
PGR119G0057 Punica granatum HOM05D002316 ORTHO05D002280 2.1e-65 253.8 314 51.0
arahy.Tifrunner.gnm1.ann1.7Q31U7 Arachis hypogaea HOM05D002316 ORTHO05D002280 3.6e-65 253.1 395 44.3
arahy.Tifrunner.gnm1.ann1.GJ1EJQ Arachis hypogaea HOM05D002316 ORTHO05D002280 6.2e-65 252.3 395 43.8
BcaB02g10892 Brassica carinata HOM05D002316 ORTHO05D002280 6.2e-65 252.3 398 43.7
BraA05t20684Z Brassica rapa HOM05D002316 ORTHO05D002280 6.2e-65 252.3 399 42.6
CDE10G0003 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 8.1e-65 251.9 248 60.5
THA.LOC104815594 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 8.1e-65 251.9 420 41.9
A05p17910 Brassica napus HOM05D002316 ORTHO05D002280 1.1e-64 251.5 399 42.4
Psat0s3082g0160 Pisum sativum HOM05D002316 ORTHO05D002280 3.1e-64 250.0 404 44.6
Ah.15g094840 Amaranthus hybridus HOM05D002316 ORTHO05D002280 4.0e-64 249.6 280 54.3
CARHR044090 Cardamine hirsuta HOM05D002316 ORTHO05D002280 9.0e-64 248.4 405 43.7
Lalb_Chr04g0253971 Lupinus albus HOM05D002316 ORTHO05D002280 1.4e-61 241.1 401 42.6
Migut.D00907 Erythranthe guttata HOM05D002316 ORTHO05D002280 7.1e-61 238.8 291 50.2
HPP92_027909 Vanilla planifolia HOM05D002316 ORTHO05D002280 1.6e-60 237.7 396 43.7
Lalb_Chr17g0343181 Lupinus albus HOM05D002316 ORTHO05D002280 2.3e-59 233.8 399 43.6
HPP92_024475 Vanilla planifolia HOM05D002316 ORTHO05D002280 1.1e-58 231.5 396 42.9
Os10g0198600 Oryza sativa ssp. japonica HOM05D002316 ORTHO05D002280 7.3e-58 228.8 300 45.7
Hund18629 Selenicereus undatus HOM05D002316 ORTHO05D002280 8.1e-57 225.3 298 49.7
HPP92_024371 Vanilla planifolia HOM05D002316 ORTHO05D002280 3.1e-56 223.4 293 49.8
SalBow6G6393 Salvia bowleyana HOM05D002316 ORTHO05D002280 3.8e-54 216.5 417 38.8
Zm00001eb066360 Zea mays HOM05D002316 ORTHO05D002280 1.2e-52 211.5 302 41.7
SGA_v2.0_scaffold71G23943 Striga asiatica HOM05D002316 ORTHO05D002280 2.0e-47 194.1 405 39.3
Sed0007223 Sechium edule HOM05D002316 ORTHO05D002280 1.3e-46 191.4 399 40.4
Lj3g0022142 Lotus japonicus HOM05D002316 ORTHO05D002280 3.8e-46 189.9 301 45.8
HanXRQChr12g0360051 Helianthus annuus HOM05D002316 ORTHO05D002280 1.2e-44 184.9 290 46.9
SGA_v2.0_scaffold122G33301 Striga asiatica HOM05D000070 ORTHO05D002280 3.5e-44 183.3 351 41.6
ECA234G4725 Erigeron canadensis HOM05D002316 ORTHO05D002280 4.6e-44 183.0 313 44.1
Lsat_1_v5_gn_5_137661 Lactuca sativa HOM05D002316 ORTHO05D002280 8.7e-43 178.7 262 47.3
Hund18630 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.5e-42 177.9 434 36.2
CDE05G3243 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 1.8e-40 171.0 103 79.6
SEGI_28906 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 3.8e-38 163.3 235 44.3
SEGI_23297 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 6.7e-35 152.5 247 43.3
HanXRQChr02g0033821 Helianthus annuus HOM05D002316 ORTHO05D002280 9.0e-32 142.1 201 48.8
CSS0001569 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.0e-30 138.7 83 80.7
CSS0010846 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.0e-30 138.7 83 80.7
CSS0037592 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.0e-30 138.7 83 80.7
Rhsim08G0245300 Rhododendron simsii HOM05D002316 ORTHO05D002280 2.9e-30 137.1 170 48.2
CSS0007790 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.9e-29 134.4 85 76.5
Hund05697 Selenicereus undatus HOM05D002316 ORTHO05D002280 4.6e-28 129.8 319 36.4
arahy.Tifrunner.gnm1.ann1.3AJ3RF Arachis hypogaea HOM05D002316 ORTHO05D002280 6.7e-27 125.9 96 66.7
arahy.Tifrunner.gnm1.ann1.RGSX4D Arachis hypogaea HOM05D002316 ORTHO05D002280 1.1e-26 125.2 84 72.6
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.3e-25 121.7 84 72.6
SEGI_25181 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 2.6e-23 114.0 238 35.3
arahy.Tifrunner.gnm1.ann1.L7TQPJ Arachis hypogaea HOM05D002316 ORTHO05D002280 3.4e-23 113.6 84 69.0
HanXRQChr10g0311621 Helianthus annuus HOM05D002316 ORTHO05D002280 1.0e-22 112.1 292 36.0
SMO347G0244 Selaginella moellendorffii HOM05D002316 ORTHO05D002280 1.0e-22 112.1 280 36.1
vmacro18773 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.3e-22 111.7 90 62.2
Mapoly0056s0004 Marchantia polymorpha HOM05D002316 ORTHO05D002280 1.6e-20 104.8 292 31.5
Lj9A539T86 Lonicera japonica HOM05D002316 ORTHO05D002280 2.7e-20 104.0 219 37.9
CSS0023276 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 3.6e-20 103.6 64 75.0
Duzib160G0897 Durio zibethinus HOM05D002316 ORTHO05D002280 2.3e-19 100.9 188 42.6
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 3.9e-19 100.1 331 29.3
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 2.2e-17 94.4 199 35.7
Pp3c23_5090 Physcomitrium patens HOM05D002316 ORTHO05D002280 3.5e-15 87.0 335 28.1
arahy.Tifrunner.gnm1.ann1.VE80E0 Arachis hypogaea HOM05D002316 ORTHO05D002280 1.3e-14 85.1 62 67.7
Psat1g193320 Pisum sativum HOM05D002316 ORTHO05D019804 2.5e-13 80.9 72 56.9
Lj9C539G6 Lonicera japonica HOM05D002316 ORTHO05D002280 5.2e-11 73.2 48 66.7
Lj9A539G83 Lonicera japonica HOM05D002316 ORTHO05D002280 1.1e-08 65.5 96 46.9
CSS0028776 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 1.0e-06 58.9 73 58.9
CSS0036220 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 1.0e-06 58.9 62 64.5
CSS0004383 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 2.2e-06 57.8 73 57.5


User provided reference genes

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