Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 7.0e-113 410.6 203 100.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 2.3e-92 342.4 204 79.9
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.0e-92 341.7 203 78.8
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 4.9e-90 334.7 203 77.8
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 6.3e-90 334.3 206 77.7
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.2e-89 332.0 206 76.2
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 9.2e-89 330.5 203 75.4
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.5e-88 328.6 203 74.9
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.9e-88 327.8 204 76.5
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.3e-87 326.6 207 76.8
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.9e-87 325.5 204 79.4
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 6.6e-87 324.3 203 73.9
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 8.6e-87 323.9 203 75.9
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.9e-86 322.8 205 74.6
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.9e-86 322.8 204 74.0
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.5e-86 322.4 205 73.7
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.5e-86 322.4 207 76.8
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 3.3e-86 322.0 204 73.0
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 9.5e-86 320.5 204 76.5
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.2e-85 320.1 205 74.1
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.2e-85 320.1 204 73.5
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.6e-85 319.7 205 73.7
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.6e-85 319.7 204 76.5
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.8e-85 318.9 204 75.0
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 3.6e-85 318.5 204 73.0
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 3.6e-85 318.5 205 73.2
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 6.1e-85 317.8 207 72.9
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.8e-84 316.2 205 72.2
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 5.2e-84 314.7 204 71.1
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 6.8e-84 314.3 204 72.5
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 6.8e-84 314.3 204 71.1
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 8.9e-84 313.9 204 70.6
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.0e-83 312.8 204 74.5
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.0e-83 312.8 204 74.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.6e-83 312.4 202 73.3
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 2.6e-83 312.4 204 75.0
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.6e-83 312.4 204 74.5
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 2.6e-83 312.4 203 70.9
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 5.8e-83 311.2 205 73.7
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 9.8e-83 310.5 227 67.0
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.7e-82 309.7 202 72.8
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.2e-82 309.3 204 72.1
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.7e-82 308.5 204 73.5
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 3.7e-82 308.5 202 70.8
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 4.9e-82 308.1 202 72.8
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.4e-81 306.6 205 72.7
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.4e-81 305.8 205 72.2
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 2.4e-81 305.8 205 70.2
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 5.4e-81 304.7 202 70.3
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.6e-80 303.1 204 71.6
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.6e-80 303.1 205 71.7
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.0e-80 302.8 204 71.1
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 2.0e-80 302.8 203 70.9
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.0e-79 300.4 205 70.2
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.7e-79 299.7 202 72.3
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 5.0e-79 298.1 204 69.1
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.0e-79 298.1 205 71.7
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 5.0e-79 298.1 205 70.2
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 6.6e-79 297.7 206 71.8
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 6.6e-79 297.7 201 70.1
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 6.6e-79 297.7 205 69.8
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.1e-78 297.0 199 70.9
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.9e-78 296.2 202 68.8
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.9e-78 296.2 202 68.8
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.9e-78 296.2 193 71.5
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 3.3e-78 295.4 202 71.3
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 4.3e-78 295.0 204 70.6
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 5.6e-78 294.7 201 70.1
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 5.6e-78 294.7 203 70.4
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 7.3e-78 294.3 203 70.0
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.2e-77 293.5 203 68.5
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 2.1e-77 292.7 202 69.8
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.1e-77 292.7 201 70.6
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 2.1e-77 292.7 194 71.6
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.6e-77 292.0 255 58.4
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 4.7e-77 291.6 209 67.5
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 4.7e-77 291.6 203 66.5
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 6.2e-77 291.2 204 69.1
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 8.1e-77 290.8 199 68.8
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.1e-76 290.4 202 69.3
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.1e-76 290.4 203 66.0
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.1e-76 290.4 195 70.8
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.3e-76 289.3 201 68.7
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 2.3e-76 289.3 200 70.0
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 3.1e-76 288.9 203 64.5
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 3.1e-76 288.9 203 65.5
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 3.1e-76 288.9 203 65.5
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 3.1e-76 288.9 204 68.1
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 8.9e-76 287.3 203 64.5
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 8.9e-76 287.3 199 68.8
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.2e-75 287.0 199 69.8
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.0e-75 286.2 205 69.3
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 2.6e-75 285.8 203 65.5
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 2.6e-75 285.8 205 69.8
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 5.8e-75 284.6 203 64.5
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 5.8e-75 284.6 204 70.6
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 7.5e-75 284.3 203 64.0
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 7.5e-75 284.3 203 64.0
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 7.5e-75 284.3 203 64.5
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 9.8e-75 283.9 203 64.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.7e-74 283.1 202 68.3
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.7e-74 283.1 203 64.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.2e-74 282.7 202 67.8
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.7e-74 282.0 203 65.0
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 6.4e-74 281.2 203 64.5
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 6.4e-74 281.2 203 64.5
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 6.4e-74 281.2 203 64.5
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 8.3e-74 280.8 203 64.5
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.1e-73 280.4 203 63.5
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.4e-73 280.0 202 64.9
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.4e-73 279.3 203 64.0
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 9.2e-73 277.3 203 64.0
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.7e-72 275.8 213 62.4
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.7e-72 275.8 205 66.8
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 7.8e-72 274.2 204 66.7
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 7.3e-70 267.7 193 65.8
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.2e-69 266.9 204 61.8
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 4.7e-69 265.0 207 62.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 8.4e-66 254.2 208 61.1
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.8e-59 231.5 214 54.2
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 8.7e-55 217.6 209 52.6
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.5e-54 216.9 139 76.3
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.5e-54 216.1 203 54.2
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 5.6e-54 214.9 205 56.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 7.3e-54 214.5 154 69.5
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 7.3e-54 214.5 147 71.4
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 8.1e-53 211.1 146 68.5
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.3e-52 208.4 141 70.9
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.3e-50 203.8 145 71.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.6e-48 195.3 148 68.9
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.4e-44 183.7 127 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 4.0e-44 182.2 206 46.1
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.3e-38 162.2 180 49.4
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.7e-30 135.2 80 75.0
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.6e-29 133.7 197 37.1
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 1.5e-27 127.1 193 42.5
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.1e-25 120.9 99 58.6
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 5.5e-25 118.6 128 46.1
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 9.3e-25 117.9 66 81.8
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.2e-24 117.5 197 38.1
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.1e-24 116.7 137 48.2
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 2.2e-21 106.7 69 69.6
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.8e-21 105.5 70 77.1
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.7e-13 80.5 50 68.0
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.8e-13 79.7 63 60.3
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-12 77.8 50 74.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-12 77.8 50 74.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.4e-12 76.6 66 62.1
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 6.9e-12 75.1 118 35.6
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 3.2e-09 66.2 72 56.9
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 2.3e-07 60.1 43 62.8
Rhsim04G0170200 Rhododendron simsii HOM05D000866 ORTHO05D000673 3.3e-06 56.2 32 78.1
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 4.4e-06 55.8 81 40.7


User provided reference genes

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