Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 2.0e-141 505.8 255 100.0
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 3.2e-83 312.4 239 67.4
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 2.7e-82 309.3 239 66.5
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 2.0e-80 303.1 236 67.4
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 4.1e-78 295.4 241 64.7
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 1.9e-75 286.6 242 62.0
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 4.2e-75 285.4 234 62.8
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 1.2e-74 283.9 240 62.5
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 1.2e-72 277.3 242 61.6
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.7e-71 273.5 206 68.4
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 2.2e-71 273.1 206 68.4
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.7e-71 272.3 244 61.9
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 4.9e-71 271.9 292 56.5
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 9.2e-70 267.7 257 57.6
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 2.0e-69 266.5 257 57.6
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 7.8e-69 264.6 223 61.4
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 1.9e-67 260.0 239 62.8
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 4.3e-67 258.8 237 59.1
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 7.3e-67 258.1 239 59.4
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 1.2e-66 257.3 220 65.9
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 1.6e-66 256.9 220 65.0
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 8.0e-66 254.6 204 63.7
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 1.0e-65 254.2 209 63.2
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.0e-65 254.2 244 57.8
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 1.0e-65 254.2 222 62.2
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 1.8e-65 253.4 229 59.0
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 5.2e-65 251.9 256 55.1
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 8.9e-65 251.1 230 57.4
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 8.9e-65 251.1 240 57.9
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 1.2e-64 250.8 224 59.4
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 1.2e-64 250.8 252 56.3
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 1.2e-64 250.8 258 54.3
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 3.4e-64 249.2 248 57.7
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 4.4e-64 248.8 255 55.3
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 7.5e-64 248.1 253 54.9
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 6.4e-63 245.0 206 60.7
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 1.9e-62 243.4 205 64.4
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 5.4e-62 241.9 222 57.2
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 9.2e-62 241.1 249 56.6
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 2.7e-61 239.6 230 60.0
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 2.7e-61 239.6 207 58.9
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 3.5e-61 239.2 229 58.5
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 1.3e-60 237.3 211 59.7
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 1.3e-60 237.3 241 53.1
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 2.3e-60 236.5 237 55.7
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 3.0e-60 236.1 206 58.7
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 5.0e-60 235.3 251 54.2
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 6.6e-60 235.0 244 54.5
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 1.9e-59 233.4 207 59.9
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 2.5e-59 233.0 233 56.7
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 7.3e-59 231.5 247 54.7
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 1.6e-58 230.3 248 53.6
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.8e-58 229.6 269 49.1
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.6e-58 229.2 196 63.8
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 1.4e-57 227.3 237 54.9
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 6.8e-57 224.9 208 57.2
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 6.8e-57 224.9 183 65.6
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 2.6e-56 223.0 218 56.0
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 5.8e-56 221.9 248 53.2
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 9.8e-56 221.1 203 58.6
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 1.3e-55 220.7 223 58.3
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 2.2e-55 219.9 217 57.1
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 5.4e-54 215.3 243 52.7
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 7.1e-54 214.9 202 56.4
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 1.2e-53 214.2 212 57.1
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.6e-53 213.8 173 64.7
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.6e-53 213.8 173 64.7
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 2.1e-53 213.4 220 53.2
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 3.5e-53 212.6 212 53.3
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 4.6e-53 212.2 233 52.4
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 7.8e-53 211.5 227 54.6
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 7.8e-53 211.5 175 65.7
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 1.7e-52 210.3 226 52.2
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 5.1e-52 208.8 200 58.5
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 1.1e-51 207.6 213 55.4
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.5e-51 207.2 206 53.9
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 1.2e-50 204.1 184 59.8
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 1.6e-50 203.8 244 50.4
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 1.8e-49 200.3 204 55.4
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 3.1e-49 199.5 141 64.5
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 4.0e-49 199.1 256 48.8
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 4.0e-49 199.1 228 50.9
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 5.2e-49 198.7 219 50.2
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 6.8e-49 198.4 200 53.0
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 8.9e-49 198.0 225 48.4
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 1.7e-47 193.7 188 53.7
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 2.9e-47 193.0 195 53.8
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 6.4e-47 191.8 161 59.6
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 8.3e-47 191.4 193 55.4
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 1.1e-46 191.0 209 52.2
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 1.1e-46 191.0 230 47.0
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 1.4e-46 190.7 176 56.8
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 1.9e-46 190.3 212 51.4
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 3.2e-46 189.5 193 55.4
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 4.1e-46 189.1 165 58.2
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 7.1e-46 188.3 168 59.5
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 2.7e-45 186.4 186 55.4
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 7.8e-45 184.9 155 60.0
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.0e-44 184.5 149 61.1
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.0e-44 184.5 177 55.4
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 1.0e-44 184.5 177 55.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.3e-44 184.1 144 62.5
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 1.7e-44 183.7 219 48.4
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 3.9e-44 182.6 196 51.5
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 8.6e-44 181.4 238 45.4
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 1.9e-43 180.3 138 63.8
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 1.4e-38 164.1 250 44.4
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 4.2e-38 162.5 240 43.8
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 2.1e-37 160.2 150 56.0
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 3.3e-35 152.9 127 57.5
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 2.8e-34 149.8 125 54.4
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 8.1e-34 148.3 141 52.5
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 6.9e-33 145.2 113 56.6
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 1.5e-32 144.1 157 49.0
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.0e-32 143.7 156 51.9
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 2.6e-32 143.3 142 52.8
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 1.3e-31 141.0 124 57.3
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 5.1e-28 129.0 155 45.2
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 2.5e-27 126.7 82 69.5
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 5.6e-27 125.6 86 69.8
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 3.2e-22 109.8 207 38.6
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 6.2e-18 95.5 103 51.5
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 4.0e-17 92.8 116 49.1
TAR622G0501 Trochodendron aralioides HOM05D007016 ORTHO05D008847 1.6e-10 70.9 47 74.5
TPR.G22067 Trifolium pratense HOM05D007016 ORTHO05D008847 1.7e-07 60.8 62 51.6
PSO675G1839 Papaver somniferum HOM05D000047 ORTHO05D000044 2.5e-06 57.0 63 54.0
Nitab4.5_0002582g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 3.2e-06 56.6 44 59.1


User provided reference genes

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