Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.0e-33 145.2 74 100.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.6e-29 130.2 72 91.7
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.6e-29 130.2 72 91.7
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.3e-21 105.9 72 79.2
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 6.6e-21 103.6 68 80.9
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.9e-20 102.1 68 76.5
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.5e-20 101.7 72 73.6
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.3e-20 100.9 75 74.7
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 7.3e-20 100.1 76 75.0
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.3e-19 99.4 72 72.2
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-19 99.4 72 72.2
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.6e-19 99.0 72 79.2
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 2.1e-19 98.6 74 77.0
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.8e-19 98.2 72 72.2
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 3.6e-19 97.8 72 70.8
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.8e-19 97.4 72 70.8
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-18 96.3 72 70.8
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.8e-18 95.5 72 66.7
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.8e-18 95.5 67 74.6
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 6.9e-18 93.6 72 65.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 9.0e-18 93.2 75 72.0
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.2e-17 92.8 74 71.6
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.5e-17 92.4 72 65.3
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.4e-17 91.3 72 65.3
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.8e-17 90.5 67 70.1
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.8e-17 90.5 67 70.1
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 5.8e-17 90.5 67 70.1
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.3e-16 89.4 67 68.7
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.8e-16 87.8 71 64.8
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.9e-16 87.4 73 72.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.1e-15 86.3 79 67.1
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.1e-15 86.3 79 67.1
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.4e-15 85.9 72 61.1
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.9e-15 85.5 68 64.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 3.2e-15 84.7 74 64.9
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.2e-15 84.7 74 70.3
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.2e-14 82.8 72 59.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.1e-14 82.0 73 64.4
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 3.5e-14 81.3 74 64.9
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 4.6e-14 80.9 87 57.5
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 6.0e-14 80.5 70 67.1
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 6.0e-14 80.5 69 66.7
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 7.9e-14 80.1 73 63.0
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.8e-13 79.0 74 60.8
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.3e-13 78.6 63 65.1
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.9e-13 77.8 71 56.3
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 6.7e-13 77.0 71 56.3
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 8.7e-13 76.6 74 60.8
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.1e-12 76.3 71 54.9
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.1e-12 76.3 85 51.8
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 1.5e-12 75.9 71 54.9
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.9e-12 75.5 71 56.3
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.9e-12 75.5 66 62.1
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.9e-12 75.5 67 61.2
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.5e-12 75.1 67 64.2
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 3.3e-12 74.7 66 62.1
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 4.3e-12 74.3 85 52.9
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 5.6e-12 73.9 74 56.8
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 5.6e-12 73.9 71 56.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.6e-12 73.9 71 54.9
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 7.4e-12 73.6 71 59.2
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-11 72.8 66 63.6
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.6e-11 72.4 67 59.7
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.1e-11 72.0 69 56.5
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.8e-11 71.6 62 67.7
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.7e-11 71.2 69 60.9
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.8e-11 70.9 89 49.4
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 4.8e-11 70.9 65 56.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.1e-10 69.7 64 59.4
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.1e-10 69.7 64 59.4
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.8e-10 68.9 70 51.4
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.1e-10 68.2 63 60.3
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 4.0e-10 67.8 89 47.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 5.3e-10 67.4 61 63.9
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 5.3e-10 67.4 89 47.2
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 5.3e-10 67.4 58 67.2
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 5.3e-10 67.4 75 52.0
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 6.9e-10 67.0 72 52.8
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.2e-09 66.2 72 55.6
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.2e-09 66.2 63 57.1
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.2e-09 66.2 77 50.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.2e-09 66.2 72 55.6
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.0e-09 65.5 62 56.5
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.6e-09 65.1 72 54.2
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 3.4e-09 64.7 72 54.2
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.4e-09 64.7 63 60.3
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.4e-09 64.7 63 60.3
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.4e-09 64.7 63 60.3
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.5e-09 64.3 69 53.6
EL10Ac2g03558 Beta vulgaris HOM05D003601 ORTHO05D004896 4.5e-09 64.3 73 52.1
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 7.6e-09 63.5 87 49.4
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 7.6e-09 63.5 65 52.3
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.3e-08 62.8 60 63.3
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.7e-08 62.4 70 52.9
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 2.2e-08 62.0 71 50.7
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.2e-08 62.0 72 51.4
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.2e-08 62.0 74 55.4
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.9e-08 61.6 69 53.6
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 2.9e-08 61.6 72 47.2
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 2.9e-08 61.6 72 48.6
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.9e-08 61.6 73 50.7
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 4.9e-08 60.8 61 59.0
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 6.5e-08 60.5 62 56.5
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 6.5e-08 60.5 100 38.0
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 8.4e-08 60.1 43 76.7
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 8.4e-08 60.1 69 50.7
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.1e-07 59.7 57 57.9
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.9e-07 58.9 81 49.4
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 1.9e-07 58.9 73 49.3
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.2e-07 58.2 83 47.0
CDE08G0618 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.2e-07 58.2 55 54.5
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 4.2e-07 57.8 63 55.6
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 4.2e-07 57.8 52 61.5
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.5e-07 57.4 56 55.4
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 9.3e-07 56.6 70 50.0
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 9.3e-07 56.6 57 50.9
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.6e-06 55.8 62 50.0
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 2.1e-06 55.5 60 55.0
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 4.6e-06 54.3 59 55.9


User provided reference genes

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