Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 7.5e-169 597.0 291 100.0
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 2.6e-113 412.5 273 75.1
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 8.8e-109 397.5 287 74.2
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 6.5e-104 381.3 273 72.2
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 5.5e-103 378.3 298 67.4
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 6.3e-99 364.8 287 67.6
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 3.1e-98 362.5 291 66.7
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 2.0e-97 359.8 295 65.4
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.4e-95 353.6 289 65.4
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.4e-95 353.6 292 66.4
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.4e-95 353.6 293 67.2
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 2.5e-95 352.8 281 66.9
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.2e-95 352.1 289 65.1
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 2.1e-94 349.7 278 67.3
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 3.6e-94 349.0 298 64.4
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 4.7e-94 348.6 281 66.9
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 1.0e-93 347.4 297 63.6
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.0e-93 347.4 286 67.5
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 5.2e-93 345.1 271 65.7
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 4.4e-92 342.0 303 61.7
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 4.4e-92 342.0 301 65.8
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.7e-91 340.1 269 69.9
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 2.8e-91 339.3 287 63.1
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 1.8e-90 336.7 260 68.1
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 9.1e-90 334.3 290 63.1
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.2e-89 334.0 300 61.3
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 1.2e-89 334.0 296 63.2
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.0e-89 333.2 288 65.3
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 3.5e-89 332.4 301 61.1
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 5.9e-89 331.6 218 77.5
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.7e-89 331.3 290 62.4
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.0e-88 330.9 302 60.3
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-88 330.9 291 63.9
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.2e-88 329.7 301 59.8
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.2e-88 329.7 290 62.1
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 2.9e-88 329.3 268 65.7
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 3.8e-88 328.9 292 63.4
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.8e-88 328.9 291 63.9
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.1e-87 327.4 302 57.9
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 1.1e-87 327.4 302 62.9
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.9e-87 326.6 288 64.2
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 2.5e-87 326.2 266 65.0
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 3.2e-87 325.9 310 60.6
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.2e-87 325.5 285 62.8
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 4.2e-87 325.5 293 61.1
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 7.2e-87 324.7 290 63.1
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 9.4e-87 324.3 292 60.6
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 9.4e-87 324.3 218 73.4
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.2e-86 323.9 261 67.8
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.1e-86 323.2 294 59.5
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 2.1e-86 323.2 305 58.7
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 2.1e-86 323.2 284 62.3
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 4.7e-86 322.0 301 58.8
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 1.0e-85 320.9 304 57.9
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 1.8e-85 320.1 301 58.5
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.8e-85 320.1 265 61.9
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 5.2e-85 318.5 298 58.7
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 5.2e-85 318.5 282 61.0
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 1.5e-84 317.0 213 73.2
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 2.0e-84 316.6 295 58.3
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 2.6e-84 316.2 290 60.3
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 3.3e-84 315.8 233 68.2
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 5.7e-84 315.1 283 61.5
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 5.7e-84 315.1 230 70.0
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 9.7e-84 314.3 276 60.1
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.3e-83 313.9 309 57.0
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.7e-83 313.5 296 58.1
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.7e-83 313.5 297 57.9
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.7e-83 313.5 297 57.9
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.2e-83 313.2 290 61.0
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 2.8e-83 312.8 226 69.9
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 6.3e-83 311.6 310 57.4
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 6.3e-83 311.6 310 56.8
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.1e-82 310.8 276 60.1
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.4e-82 310.5 293 59.0
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 1.4e-82 310.5 281 60.1
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.8e-82 310.1 280 63.2
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.8e-82 310.1 280 63.2
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.8e-82 310.1 301 59.5
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.8e-82 310.1 226 69.0
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.4e-82 309.7 212 73.6
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.4e-82 309.7 301 58.8
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 2.4e-82 309.7 272 59.6
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 4.1e-82 308.9 216 70.8
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 1.2e-81 307.4 226 69.5
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.2e-81 307.4 284 59.5
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.7e-81 306.2 208 73.1
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 2.7e-81 306.2 310 55.5
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 3.5e-81 305.8 281 59.4
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 4.5e-81 305.4 270 60.0
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.2e-79 298.9 324 54.6
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 5.5e-79 298.5 284 58.8
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 9.4e-79 297.7 281 59.4
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 1.2e-78 297.4 302 56.0
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 2.1e-78 296.6 308 54.2
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.0e-77 294.3 285 57.9
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.4e-77 293.9 297 55.2
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.3e-77 293.1 298 55.7
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.5e-76 290.4 248 59.3
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.8e-75 286.2 220 64.5
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 1.1e-74 284.3 224 65.2
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 1.1e-74 284.3 224 65.2
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 4.5e-73 278.9 218 64.7
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 8.6e-72 274.6 213 63.4
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.1e-71 274.2 213 64.8
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.2e-71 272.3 277 56.3
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 2.8e-70 269.6 225 61.8
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 2.3e-69 266.5 235 65.5
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.7e-65 253.1 200 62.5
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 6.1e-62 241.9 200 62.0
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 4.4e-60 235.7 208 58.7
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 4.1e-58 229.2 214 58.4
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.3e-53 213.4 285 42.5
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 8.9e-53 211.5 218 54.1
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 7.1e-50 201.8 167 61.7
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 4.0e-45 186.0 178 56.2
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.4e-44 183.0 223 46.2
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 2.9e-43 179.9 221 49.8
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 2.7e-41 173.3 218 43.6
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 2.7e-41 173.3 226 47.3
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 3.9e-40 169.5 218 44.0
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 5.1e-40 169.1 237 43.5
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 1.8e-37 160.6 204 50.0
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 2.1e-33 147.1 185 47.0
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.3e-32 143.7 115 67.0
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 6.2e-30 135.6 119 58.8
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.4e-29 133.7 135 51.9
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 9.9e-20 101.7 62 72.6
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.7e-19 100.9 78 62.8
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 7.9e-17 92.0 50 78.0
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 1.0e-16 91.7 209 32.5
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 6.7e-16 89.0 73 54.8
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 7.4e-15 85.5 212 34.0
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 6.2e-14 82.4 106 43.4


User provided reference genes

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