Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 3.1e-98 361.7 168 100.0
TAR375G0708 Trochodendron aralioides HOM05D006116 ORTHO05D007795 4.7e-22 108.6 59 81.4
TAR375G0725 Trochodendron aralioides HOM05D006116 ORTHO05D007795 4.7e-22 108.6 59 81.4
Potri.003G085600 Populus trichocarpa HOM05D006116 ORTHO05D007795 2.4e-18 96.3 76 56.6
Eucgr.E00329 Eucalyptus grandis HOM05D006116 ORTHO05D007795 4.1e-18 95.5 76 56.6
QL12p007972 Quercus lobata HOM05D006116 ORTHO05D007795 7.0e-18 94.7 76 57.9
COL.COLO4_06703 Corchorus olitorius HOM05D006116 ORTHO05D007795 1.2e-17 94.0 88 51.1
MD04G1057000 Malus domestica HOM05D006116 ORTHO05D007795 1.2e-17 94.0 59 67.8
FAN08G3374 Fragaria x ananassa HOM05D006116 ORTHO05D007795 5.9e-17 91.7 87 48.3
RcHm_v2.0_Chr7g0207741 Rosa chinensis HOM05D006116 ORTHO05D007795 7.7e-17 91.3 75 53.3
Dinv28896 Davidia involucrata HOM05D006116 ORTHO05D007795 1.0e-16 90.9 76 56.6
Duzib205G0680 Durio zibethinus HOM05D006116 ORTHO05D007795 1.0e-16 90.9 61 65.6
FAN13G0371 Fragaria x ananassa HOM05D006116 ORTHO05D007795 1.0e-16 90.9 74 54.1
CiPaw.11G085600 Carya illinoinensis HOM05D006116 ORTHO05D007795 1.3e-16 90.5 62 62.9
FAN18G3779 Fragaria x ananassa HOM05D006116 ORTHO05D007795 1.3e-16 90.5 87 47.1
Prupe.5G050800 Prunus persica HOM05D006116 ORTHO05D007795 1.3e-16 90.5 76 53.9
Thecc.03G237000 Theobroma cacao HOM05D006116 ORTHO05D007795 1.3e-16 90.5 59 66.1
vmacro00376 Vaccinium macrocarpon HOM05D006116 ORTHO05D007795 1.7e-16 90.1 76 53.9
FAN04G0705 Fragaria x ananassa HOM05D006116 ORTHO05D007795 2.3e-16 89.7 87 47.1
Solyc08g077510.4 Solanum lycopersicum HOM05D006116 ORTHO05D007795 2.3e-16 89.7 63 60.3
Sopen08g026090 Solanum pennellii HOM05D006116 ORTHO05D007795 2.3e-16 89.7 63 60.3
PGSC0003DMG400001856 Solanum tuberosum HOM05D006116 ORTHO05D007795 2.3e-16 89.7 62 62.9
CANSAT21G1244 Cannabis sativa HOM05D006116 ORTHO05D007795 3.8e-16 89.0 58 67.2
Gohir.A12G211900 Gossypium hirsutum HOM05D006116 ORTHO05D007795 3.8e-16 89.0 62 62.9
Gorai.008G230000 Gossypium raimondii HOM05D006116 ORTHO05D007795 3.8e-16 89.0 62 62.9
FvH4_5g20810 Fragaria vesca HOM05D006116 ORTHO05D007795 5.0e-16 88.6 87 46.0
Aqoxy7G00869 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 6.6e-16 88.2 62 59.7
Gohir.D12G214400 Gossypium hirsutum HOM05D006116 ORTHO05D007795 6.6e-16 88.2 59 64.4
Nitab4.5_0006135g0020 Nicotiana tabacum HOM05D006116 ORTHO05D007795 1.5e-15 87.0 76 52.6
DCAR_008310 Daucus carota HOM05D006116 ORTHO05D007795 1.9e-15 86.7 58 62.1
Hma1.2p1_0414F.1_g147510 Hydrangea macrophylla HOM05D006116 ORTHO05D007795 1.9e-15 86.7 62 61.3
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 2.5e-15 86.3 45 82.2
Actinidia03408 Actinidia chinensis HOM05D006116 ORTHO05D007795 3.3e-15 85.9 76 52.6
Rhsim11G0056500 Rhododendron simsii HOM05D006116 ORTHO05D007795 3.3e-15 85.9 76 51.3
GSVIVG01013271001 Vitis vinifera HOM05D006116 ORTHO05D007795 4.3e-15 85.5 75 53.3
Peaxi162Scf00084g00117 Petunia axillaris HOM05D006116 ORTHO05D007795 5.6e-15 85.1 76 51.3
ClCG00G004790 Citrullus lanatus HOM05D006116 ORTHO05D007795 9.5e-15 84.3 62 58.1
ClCG10G002040 Citrullus lanatus HOM05D006116 ORTHO05D007795 9.5e-15 84.3 62 58.1
CAN.G1445.8 Capsicum annuum HOM05D006116 ORTHO05D007795 1.2e-14 84.0 76 51.3
TWI60G0034 Tripterygium wilfordii HOM05D006116 ORTHO05D007795 1.2e-14 84.0 76 51.3
Haze_08334 Corylus avellana HOM05D006116 ORTHO05D007795 1.6e-14 83.6 62 56.5
Ciclev10020221m.g Citrus clementina HOM05D006116 ORTHO05D007795 2.1e-14 83.2 62 54.8
Cc08_g01540 Coffea canephora HOM05D006116 ORTHO05D007795 2.1e-14 83.2 62 56.5
CSS0034154 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 2.8e-14 82.8 64 54.7
CsaV3_3G002130 Cucumis sativus L. HOM05D006116 ORTHO05D007795 2.8e-14 82.8 62 56.5
Manes.17G019700 Manihot esculenta HOM05D006116 ORTHO05D007795 2.8e-14 82.8 62 56.5
Nitab4.5_0001255g0040 Nicotiana tabacum HOM05D006116 ORTHO05D007795 2.8e-14 82.8 76 51.3
CSS0043999 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 4.7e-14 82.0 62 54.8
PGR042G3339 Punica granatum HOM05D006116 ORTHO05D007795 6.1e-14 81.6 74 50.0
THA.LOC104813328 Tarenaya hassleriana HOM05D006116 ORTHO05D007795 6.1e-14 81.6 62 56.5
Oeu020145.1 Olea europaea HOM05D006116 ORTHO05D007795 1.0e-13 80.9 88 46.6
Lj8A287G22 Lonicera japonica HOM05D006116 ORTHO05D007795 1.8e-13 80.1 78 52.6
Medtr4g099100 Medicago truncatula HOM05D006116 ORTHO05D007795 4.0e-13 79.0 62 51.6
TPR.G11192 Trifolium pratense HOM05D006116 ORTHO05D007795 4.0e-13 79.0 62 51.6
MELO3C013885.2 Cucumis melo HOM05D006116 ORTHO05D007795 5.2e-13 78.6 62 51.6
arahy.Tifrunner.gnm1.ann1.F87Z6X Arachis hypogaea HOM05D006116 ORTHO05D007795 6.8e-13 78.2 62 51.6
arahy.Tifrunner.gnm1.ann1.L13TYF Arachis hypogaea HOM05D006116 ORTHO05D007795 6.8e-13 78.2 62 51.6
Psat4g077320 Pisum sativum HOM05D006116 ORTHO05D007795 6.8e-13 78.2 62 51.6
Sc07g0009020 Simmondsia chinensis HOM05D006116 ORTHO05D007795 6.8e-13 78.2 62 51.6
ECA240G2524 Erigeron canadensis HOM05D006116 ORTHO05D007795 8.9e-13 77.8 62 53.2
Lsat_1_v5_gn_6_88480 Lactuca sativa HOM05D006116 ORTHO05D007795 8.9e-13 77.8 62 53.2
Lalb_Chr09g0329681 Lupinus albus HOM05D006116 ORTHO05D007795 8.9e-13 77.8 76 46.1
VMungo0251G0386 Vigna mungo HOM05D006116 ORTHO05D007795 8.9e-13 77.8 58 55.2
SGA_v2.0_scaffold20G09247 Striga asiatica HOM05D006116 ORTHO05D007795 1.2e-12 77.4 72 45.8
Nn1g00701 Nelumbo nucifera HOM05D006116 ORTHO05D007795 1.5e-12 77.0 51 64.7
Ca_22031_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 2.0e-12 76.6 76 47.4
Glyma.17G150200 Glycine max HOM05D006116 ORTHO05D007795 2.0e-12 76.6 76 47.4
Hund14464 Selenicereus undatus HOM05D006116 ORTHO05D007795 2.6e-12 76.3 62 48.4
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 3.4e-12 75.9 63 54.0
AUR62018802 Chenopodium quinoa HOM05D006116 ORTHO05D007795 3.4e-12 75.9 83 42.2
Lalb_Chr05g0220761 Lupinus albus HOM05D006116 ORTHO05D007795 3.4e-12 75.9 62 51.6
Migut.E00901 Erythranthe guttata HOM05D006116 ORTHO05D007795 4.4e-12 75.5 62 51.6
Lj4g0012718 Lotus japonicus HOM05D006116 ORTHO05D007795 4.4e-12 75.5 62 50.0
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 5.7e-12 75.1 61 54.1
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 5.7e-12 75.1 62 54.8
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 7.5e-12 74.7 62 53.2
Carub.0007s2428 Capsella rubella HOM05D006116 ORTHO05D007795 7.5e-12 74.7 57 56.1
Phvul.003G227000 Phaseolus vulgaris HOM05D006116 ORTHO05D007795 7.5e-12 74.7 62 46.8
Aa31LG2G13210 Aethionema arabicum HOM05D006116 ORTHO05D007795 9.8e-12 74.3 81 45.7
CARHR223700 Cardamine hirsuta HOM05D006116 ORTHO05D007795 9.8e-12 74.3 57 56.1
PSO675G1792 Papaver somniferum HOM05D006116 ORTHO05D007795 9.8e-12 74.3 62 53.2
PSO732G0356 Papaver somniferum HOM05D006116 ORTHO05D007795 9.8e-12 74.3 62 53.2
HanXRQChr03g0087311 Helianthus annuus HOM05D006116 ORTHO05D007795 1.7e-11 73.6 62 50.0
MBI01_g18879_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 1.7e-11 73.6 52 61.5
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 2.2e-11 73.2 63 52.4
PSO732G0385 Papaver somniferum HOM05D006116 ORTHO05D007795 2.9e-11 72.8 62 51.6
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 3.7e-11 72.4 45 66.7
Sp7g17070 Schrenkiella parvula HOM05D006116 ORTHO05D007795 3.7e-11 72.4 56 55.4
Zm00001eb075030 Zea mays HOM05D006116 ORTHO05D007795 3.7e-11 72.4 82 41.5
AUR62007200 Chenopodium quinoa HOM05D006116 ORTHO05D007795 4.9e-11 72.0 80 41.2
Sed0023369 Sechium edule HOM05D006116 ORTHO05D007795 4.9e-11 72.0 52 57.7
Zm00001eb313880 Zea mays HOM05D006116 ORTHO05D007795 4.9e-11 72.0 65 46.2
Thhalv10025290m.g Eutrema salsugineum HOM05D006116 ORTHO05D007795 6.4e-11 71.6 58 53.4
Os04g0542900 Oryza sativa ssp. japonica HOM05D006116 ORTHO05D007795 8.3e-11 71.2 62 45.2
Zm00001eb091650 Zea mays HOM05D006116 ORTHO05D007795 1.1e-10 70.9 59 50.8
Zm00001eb129530 Zea mays HOM05D006116 ORTHO05D007795 1.1e-10 70.9 59 50.8
Zm00001eb276710 Zea mays HOM05D006116 ORTHO05D007795 1.1e-10 70.9 59 50.8
Zm00001eb391960 Zea mays HOM05D006116 ORTHO05D007795 1.1e-10 70.9 59 50.8
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 1.8e-10 70.1 45 68.9
Ah.12g053810 Amaranthus hybridus HOM05D006116 ORTHO05D007795 3.2e-10 69.3 62 46.8
Zm00001eb268110 Zea mays HOM05D006116 ORTHO05D007795 4.1e-10 68.9 58 50.0
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 5.4e-10 68.6 45 66.7
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 5.4e-10 68.6 45 64.4
Lsat_1_v5_gn_7_9401 Lactuca sativa HOM05D006116 ORTHO05D000290 2.0e-09 66.6 56 48.2
MSTRG.1960 Avicennia marina HOM05D006116 ORTHO05D007795 2.7e-09 66.2 69 47.8
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 2.7e-09 66.2 45 64.4
Ca_20974_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 2.7e-09 66.2 77 44.2
Pp3c2_10960 Physcomitrium patens HOM05D006116 ORTHO05D007795 2.7e-09 66.2 72 45.8
AL7G37600 Arabidopsis lyrata HOM05D006116 ORTHO05D007795 3.5e-09 65.9 53 56.6
SEGI_40490 Sequoiadendron giganteum HOM05D006116 ORTHO05D007795 3.5e-09 65.9 58 50.0
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 4.6e-09 65.5 45 66.7
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 5.9e-09 65.1 44 68.2
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 7.8e-09 64.7 45 64.4
unitig_21.g20374 Utricularia gibba HOM05D006116 ORTHO05D007795 3.0e-08 62.8 57 47.4
Pp3c14_16100 Physcomitrium patens HOM05D006116 ORTHO05D007795 5.0e-08 62.0 72 43.1
Pp3c14_16101 Physcomitrium patens HOM05D006116 ORTHO05D007795 5.0e-08 62.0 72 43.1
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 5.0e-08 62.0 44 63.6
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 6.6e-08 61.6 44 59.1
EL10Ac5g12218 Beta vulgaris HOM05D006116 ORTHO05D007795 8.6e-08 61.2 62 45.2
TAR628G1214 Trochodendron aralioides HOM05D007847 ORTHO05D414451 8.6e-08 61.2 38 71.1
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 1.1e-07 60.8 45 62.2
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 1.5e-07 60.5 44 59.1
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 1.5e-07 60.5 44 59.1
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 1.5e-07 60.5 53 56.6
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 1.9e-07 60.1 45 66.7
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 2.5e-07 59.7 52 51.9
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 2.5e-07 59.7 44 61.4
Mapoly0141s0023 Marchantia polymorpha HOM05D006116 ORTHO05D007795 2.5e-07 59.7 82 34.1
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 3.3e-07 59.3 72 40.3
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 3.3e-07 59.3 44 56.8
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 4.3e-07 58.9 42 64.3
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 5.6e-07 58.5 41 63.4
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 7.3e-07 58.2 42 59.5
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 1.2e-06 57.4 45 60.0
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.6e-06 57.0 45 57.8
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 1.6e-06 57.0 45 60.0
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 2.1e-06 56.6 45 53.3
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 2.1e-06 56.6 44 54.5
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 3.6e-06 55.8 44 54.5
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 4.7e-06 55.5 45 57.8
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 6.2e-06 55.1 45 57.8
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 6.2e-06 55.1 44 54.5


User provided reference genes

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