Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 0.0e+00 1454.9 746 100.0
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 0.0e+00 1087.0 815 70.8
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 2.6e-311 1071.6 688 75.9
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 1.2e-308 1062.8 694 77.7
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 1.4e-304 1049.3 740 72.2
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 7.1e-304 1047.0 701 74.2
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 7.8e-303 1043.5 712 73.5
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 5.1e-302 1040.8 603 80.9
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 9.5e-301 1036.6 715 71.9
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 6.2e-300 1033.9 676 76.2
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 1.2e-298 1029.6 619 78.2
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 1.2e-298 1029.6 671 73.9
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 2.0e-298 1028.9 669 74.4
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 3.4e-298 1028.1 696 72.0
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 1.3e-297 1026.2 661 77.8
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 8.3e-297 1023.5 961 56.8
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 8.3e-297 1023.5 754 69.0
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.1e-296 1023.1 678 71.7
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 7.8e-295 1016.9 681 73.3
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 2.3e-294 1015.4 782 67.0
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 3.9e-294 1014.6 678 75.5
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 2.5e-293 1011.9 712 67.6
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 2.8e-292 1008.4 616 76.0
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 3.1e-291 1005.0 588 79.3
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 4.0e-291 1004.6 630 74.6
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 5.8e-290 1000.7 626 74.9
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 1.4e-288 996.1 729 67.8
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 2.4e-288 995.3 654 72.0
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 9.3e-288 993.4 726 68.2
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 2.8e-284 981.9 752 65.0
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 2.4e-283 978.8 688 68.8
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 2.2e-281 972.2 578 76.8
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 2.1e-279 965.7 763 62.4
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.9e-277 959.1 669 69.2
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 5.6e-277 957.6 601 74.5
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 9.6e-277 956.8 734 65.7
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 2.8e-276 955.3 697 70.4
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 4.8e-276 954.5 661 68.5
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 1.4e-275 953.0 632 72.5
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.8e-275 952.6 579 77.2
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 2.4e-275 952.2 669 69.7
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 1.2e-274 949.9 621 71.3
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 9.9e-274 946.8 582 75.1
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 4.9e-273 944.5 713 65.6
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.1e-272 943.3 612 73.2
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 4.6e-271 937.9 582 74.7
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 1.8e-270 936.0 582 74.4
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 6.7e-270 934.1 670 68.1
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 6.7e-270 934.1 620 70.0
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 6.7e-270 934.1 895 56.3
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 1.3e-268 929.9 681 67.3
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.3e-265 919.8 743 64.2
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 1.9e-264 916.0 533 80.3
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 4.2e-264 914.8 578 73.2
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 4.6e-263 911.4 608 73.4
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 7.9e-263 910.6 586 72.0
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 1.0e-262 910.2 806 59.6
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 1.1e-261 906.7 606 70.1
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 7.4e-261 904.0 552 77.9
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 3.1e-259 898.7 591 72.4
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 3.8e-257 891.7 596 69.1
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 1.2e-255 886.7 578 71.5
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.2e-255 886.7 649 67.6
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 3.5e-255 885.2 582 71.1
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 1.8e-254 882.9 577 71.4
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.8e-252 875.5 596 71.6
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 8.2e-252 874.0 711 64.6
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 5.3e-251 871.3 684 64.8
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 6.9e-251 870.9 532 76.3
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 1.2e-250 870.2 559 73.7
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 5.0e-249 864.8 594 69.4
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 5.0e-249 864.8 532 75.9
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 3.0e-246 855.5 523 74.0
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.0e-238 830.5 483 78.5
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-238 830.1 696 62.9
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.3e-236 823.5 720 59.6
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 2.2e-236 822.8 499 79.2
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 8.8e-230 800.8 624 65.5
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 2.2e-228 796.2 529 73.2
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 4.1e-227 792.0 561 68.8
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.6e-226 790.0 695 62.2
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.2e-225 786.2 510 72.0
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.8e-219 766.5 523 70.7
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 2.7e-218 762.7 507 73.0
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.2e-215 753.8 522 69.7
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 7.7e-210 734.6 575 62.1
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.5e-208 730.3 690 59.7
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.2e-202 710.7 611 59.4
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.3e-201 707.2 521 68.9
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 1.1e-200 704.1 423 78.7
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 4.6e-194 682.2 730 53.3
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.9e-193 679.1 464 69.0
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.1e-192 677.6 415 74.9
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 2.6e-181 639.8 595 58.0
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 4.1e-179 632.5 396 75.0
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 3.6e-159 566.2 663 48.9
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 4.8e-159 565.8 353 77.1
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 3.3e-152 543.1 588 49.7
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 3.7e-143 513.1 378 65.3
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 7.4e-128 462.2 278 78.8
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.8e-110 404.4 326 61.0
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 9.2e-94 349.0 209 76.6
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.1e-86 325.5 297 57.2
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.5e-83 315.1 271 62.4
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.4e-78 297.7 329 53.2
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 3.6e-74 283.9 174 70.1
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.2e-73 280.0 687 31.7
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 4.0e-65 253.8 261 60.5
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.2e-65 253.4 248 61.7
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.7e-52 211.8 187 62.0
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 1.2e-48 199.1 190 56.3
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-46 192.2 139 71.9
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 2.4e-46 191.4 210 47.1
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 1.6e-45 188.7 237 46.0
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 3.7e-42 177.6 91 84.6
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.2e-40 172.6 141 66.7
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.9e-40 169.5 186 54.3
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 1.3e-39 169.1 647 24.6
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 2.2e-39 168.3 103 82.5
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 4.9e-39 167.2 115 68.7
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 2.4e-38 164.9 567 25.2
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 7.9e-37 159.8 512 25.4
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 3.9e-36 157.5 119 59.7
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.1e-33 149.4 101 61.4
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.2e-29 136.0 616 24.2
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 2.1e-29 135.2 78 85.9
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 3.9e-28 131.0 323 26.9
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.7e-27 126.3 217 41.0
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 5.3e-25 120.6 145 51.7
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.9e-23 114.8 156 43.6
AagrBONN_evm.TU.Sc2ySwM_368.2662 Anthoceros agrestis HOM05D005348 ORTHO05D006635 9.3e-22 109.8 466 23.2
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 1.1e-19 102.8 59 79.7
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 4.3e-19 100.9 132 42.4
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 3.9e-12 77.8 63 58.7
HanXRQChr11g0339471 Helianthus annuus HOM05D005348 ORTHO05D227639 3.2e-06 58.2 58 46.6


User provided reference genes

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