Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 1.1e-189 666.4 327 100.0
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 5.0e-137 491.5 315 74.3
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 2.4e-123 446.0 317 67.8
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 4.1e-123 445.3 305 70.5
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 9.2e-123 444.1 306 69.3
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 2.0e-122 443.0 311 68.5
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 1.1e-120 437.2 302 69.9
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 3.6e-119 432.2 317 63.4
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 4.7e-119 431.8 315 65.1
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 2.3e-118 429.5 316 65.2
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 2.3e-118 429.5 317 64.0
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 2.3e-118 429.5 310 64.5
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 2.3e-118 429.5 321 67.3
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 6.8e-118 427.9 308 65.9
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 6.8e-118 427.9 320 64.1
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 2.2e-116 422.9 311 63.3
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 2.9e-116 422.5 307 64.8
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 9.2e-115 417.5 326 63.8
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 3.5e-114 415.6 316 64.2
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 4.6e-114 415.2 297 66.0
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 1.0e-113 414.1 298 65.4
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 1.7e-113 413.3 303 64.7
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 3.0e-113 412.5 325 61.5
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 3.0e-113 412.5 325 61.5
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 3.0e-113 412.5 317 61.5
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 6.6e-113 411.4 308 64.6
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 1.5e-112 410.2 288 66.7
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 2.5e-112 409.5 298 64.8
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 3.3e-112 409.1 325 61.2
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 2.1e-111 406.4 304 64.1
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 2.1e-111 406.4 322 60.9
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 6.2e-111 404.8 307 65.8
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 8.0e-111 404.4 301 63.1
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 8.0e-111 404.4 315 63.2
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 1.4e-110 403.7 313 63.9
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 1.4e-110 403.7 299 64.5
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 1.8e-110 403.3 315 62.5
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.3e-110 402.9 315 60.3
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 2.3e-110 402.9 315 61.6
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 5.2e-110 401.7 314 61.1
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 6.8e-110 401.4 317 59.9
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 8.9e-110 401.0 317 59.9
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 1.5e-109 400.2 302 62.3
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 2.6e-109 399.4 311 63.0
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 4.4e-109 398.7 302 62.6
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 4.4e-109 398.7 318 62.6
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 7.5e-109 397.9 312 59.9
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 9.8e-109 397.5 303 61.1
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 1.7e-108 396.7 298 62.8
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 1.7e-108 396.7 315 59.7
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 8.3e-108 394.4 323 57.9
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 1.9e-107 393.3 304 63.2
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 3.2e-107 392.5 297 62.3
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 3.2e-107 392.5 303 61.1
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 5.4e-107 391.7 322 60.6
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 9.2e-107 391.0 293 63.5
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 9.2e-107 391.0 299 62.5
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 9.2e-107 391.0 298 61.4
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 1.2e-106 390.6 302 62.6
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 1.6e-106 390.2 304 62.2
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 2.1e-106 389.8 318 58.2
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 4.6e-106 388.7 298 61.4
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 4.6e-106 388.7 301 61.5
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 6.0e-106 388.3 296 62.5
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 7.8e-106 387.9 294 66.3
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 1.3e-105 387.1 317 60.3
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.7e-105 386.7 284 64.1
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 5.1e-105 385.2 299 61.5
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 5.1e-105 385.2 299 60.9
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 5.1e-105 385.2 313 58.8
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 2.5e-104 382.9 304 59.9
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 4.3e-104 382.1 299 60.5
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 5.6e-104 381.7 322 58.1
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 7.3e-104 381.3 312 59.9
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 7.3e-104 381.3 315 58.1
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 7.3e-104 381.3 315 58.1
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 7.3e-104 381.3 313 58.1
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 7.3e-104 381.3 313 60.4
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 7.3e-104 381.3 298 59.1
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 9.5e-104 380.9 316 58.9
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 2.8e-103 379.4 312 57.4
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 4.7e-103 378.6 315 58.7
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 1.1e-102 377.5 306 60.1
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 5.2e-102 375.2 332 56.3
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 8.9e-102 374.4 325 59.4
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 1.5e-101 373.6 287 64.8
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 1.3e-100 370.5 319 56.4
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 1.7e-100 370.2 238 67.6
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 2.2e-100 369.8 238 67.2
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 8.3e-100 367.9 316 55.7
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 1.2e-98 364.0 297 57.6
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 2.3e-97 359.8 223 69.1
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 1.1e-96 357.5 206 76.2
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 3.3e-96 355.9 274 62.0
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 4.3e-96 355.5 294 55.4
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 1.1e-94 350.9 322 52.2
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 6.8e-94 348.2 315 54.3
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 3.8e-92 342.4 317 52.7
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 1.1e-91 340.9 314 51.0
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 1.1e-91 340.9 241 63.9
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 7.3e-88 328.2 314 50.0
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 7.3e-88 328.2 312 52.6
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 6.4e-84 315.1 213 65.3
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 5.4e-83 312.0 238 56.7
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 5.4e-83 312.0 314 52.9
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 7.1e-83 311.6 235 58.7
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 1.2e-82 310.8 191 72.8
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 4.6e-82 308.9 299 51.5
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.5e-80 303.9 210 61.9
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.5e-80 303.9 210 61.9
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 3.3e-80 302.8 317 48.3
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 3.3e-80 302.8 317 48.3
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 4.3e-80 302.4 262 54.6
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 7.3e-80 301.6 236 55.5
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.6e-79 300.4 308 47.1
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 8.1e-79 298.1 262 55.7
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 9.0e-78 294.7 247 55.1
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 6.2e-71 271.9 151 78.1
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 4.5e-69 265.8 303 45.2
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 8.4e-68 261.5 236 50.4
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 1.4e-67 260.8 303 44.2
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 6.5e-60 235.3 252 48.8
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.1e-59 234.6 133 75.2
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 2.0e-53 213.8 136 71.3
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 1.1e-51 208.0 205 51.7
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 1.2e-50 204.5 292 38.0
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 1.4e-49 201.1 137 65.0
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 1.7e-44 184.1 105 77.1
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 6.3e-31 139.0 103 60.2
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 3.5e-29 133.3 170 44.1
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 2.4e-14 84.0 142 36.6
unitig_52.g17562 Utricularia gibba HOM05D005894 ORTHO05D420364 2.3e-09 67.4 54 55.6
SMO195G0042 Selaginella moellendorffii HOM05D005894 ORTHO05D376219 4.4e-08 63.2 69 46.4


User provided reference genes

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