Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 0.0e+00 1095.5 532 100.0
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.8e-200 703.0 466 73.4
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 2.0e-183 646.4 463 65.0
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 5.6e-178 628.2 459 65.6
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 2.2e-174 616.3 445 67.6
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 6.0e-172 608.2 445 64.9
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.2e-169 600.5 460 64.1
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 2.8e-169 599.4 448 66.5
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 1.0e-163 580.9 452 64.2
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 8.6e-163 577.8 467 60.4
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.5e-162 577.0 450 60.4
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.1e-161 573.2 528 55.9
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 6.8e-160 568.2 479 57.8
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 9.9e-159 564.3 405 66.7
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 8.4e-158 561.2 481 57.6
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 3.2e-157 559.3 446 61.4
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.2e-157 558.9 464 58.4
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 7.1e-157 558.1 457 59.3
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.2e-156 557.4 453 60.0
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.2e-156 557.4 461 61.6
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 3.5e-156 555.8 448 61.6
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.3e-155 553.9 428 60.7
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 8.7e-155 551.2 471 57.7
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 6.9e-152 541.6 461 58.4
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.0e-151 540.0 464 58.2
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 2.2e-150 536.6 452 59.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.4e-149 533.9 450 56.0
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.4e-149 533.9 443 59.4
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 3.2e-149 532.7 392 64.0
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.4e-149 531.9 461 58.1
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 5.4e-149 531.9 461 58.1
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 9.3e-149 531.2 452 58.4
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.6e-148 530.4 461 57.9
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 3.5e-148 529.3 462 58.0
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.3e-147 527.3 461 57.5
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.3e-146 522.7 462 57.4
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 7.3e-146 521.5 467 56.7
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 7.3e-146 521.5 448 58.5
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 9.6e-146 521.2 452 58.6
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 3.6e-145 519.2 436 58.0
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 6.9e-144 515.0 451 57.4
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 2.2e-142 510.0 454 56.2
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 4.9e-142 508.8 406 60.3
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 4.2e-141 505.8 404 61.6
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.5e-140 502.7 436 59.4
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 3.5e-140 502.7 449 54.8
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 4.6e-140 502.3 445 57.3
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.8e-139 500.4 455 53.2
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 6.7e-139 498.4 461 53.4
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.5e-138 497.3 445 53.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.5e-138 497.3 449 55.0
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 9.6e-138 494.6 444 54.3
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.3e-137 494.2 464 54.3
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.8e-137 493.0 464 54.7
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.7e-137 492.7 423 58.6
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.7e-137 492.7 450 55.8
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 4.8e-137 492.3 447 56.8
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 4.8e-137 492.3 453 55.0
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 8.1e-137 491.5 465 53.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-136 491.1 450 55.8
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.1e-136 491.1 444 55.6
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.4e-136 490.7 447 56.2
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.8e-136 490.3 445 53.5
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 3.1e-136 489.6 447 56.8
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 4.0e-136 489.2 444 55.0
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 5.3e-136 488.8 423 56.0
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.3e-136 488.8 403 59.3
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 9.0e-136 488.0 428 55.4
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 2.6e-135 486.5 449 55.2
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.0e-134 484.6 447 55.0
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.3e-134 484.2 448 53.3
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 2.2e-134 483.4 391 59.1
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 6.5e-134 481.9 448 52.7
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.1e-133 481.1 446 53.6
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 3.2e-133 479.6 459 52.7
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 4.2e-133 479.2 459 52.7
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 7.1e-133 478.4 464 52.2
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 6.0e-132 475.3 446 52.2
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 7.9e-132 474.9 433 53.3
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 2.3e-131 473.4 452 52.4
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.0e-131 473.0 449 53.7
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 3.9e-131 472.6 461 53.4
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-128 464.5 472 52.3
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.0e-127 460.3 425 53.9
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 2.6e-127 459.9 447 52.3
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 3.8e-126 456.1 380 60.0
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.8e-123 447.2 450 50.9
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 3.9e-123 446.0 450 50.2
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 5.1e-123 445.7 449 49.7
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 5.1e-123 445.7 457 49.9
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.1e-122 444.5 456 50.0
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 3.3e-122 443.0 447 50.1
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 4.3e-122 442.6 383 56.1
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 3.7e-121 439.5 437 51.3
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 4.8e-121 439.1 513 45.6
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.1e-120 438.0 450 48.7
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.4e-120 437.6 443 50.3
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 6.9e-120 435.3 442 49.8
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 9.0e-120 434.9 450 49.6
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 2.0e-119 433.7 453 48.8
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 2.0e-119 433.7 453 48.8
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 2.6e-119 433.3 455 49.5
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.9e-119 432.2 450 51.3
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 7.7e-119 431.8 454 49.1
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 7.7e-119 431.8 412 52.4
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.3e-118 431.0 454 49.1
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.2e-116 424.5 428 50.5
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 2.1e-116 423.7 515 44.1
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 4.6e-116 422.5 471 43.9
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.4e-115 421.0 387 56.1
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 3.0e-115 419.9 458 48.9
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.4e-112 411.0 433 48.5
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.1e-112 409.8 453 48.3
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 6.9e-112 408.7 401 52.1
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.7e-108 396.7 361 53.2
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 6.1e-108 395.6 459 45.5
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.6e-106 390.2 450 47.3
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 3.7e-105 386.3 362 53.0
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 3.7e-105 386.3 464 42.7
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.8e-105 386.0 334 57.5
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 6.3e-105 385.6 488 43.6
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.1e-104 383.3 448 46.4
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.6e-103 380.2 316 60.1
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.2e-97 360.5 447 42.3
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.1e-96 358.2 417 45.3
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.0e-91 341.7 453 42.2
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.1e-80 305.1 342 46.2
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.8e-76 290.4 293 52.9
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 8.9e-59 232.3 323 38.7
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.0e-58 231.1 374 37.4
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 7.5e-58 229.2 236 46.6
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 2.3e-54 217.6 263 43.0
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-53 215.3 313 39.0
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.2e-49 201.1 168 56.0
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 4.7e-44 183.3 360 29.4
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.2e-34 152.1 447 25.5
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.4e-33 146.0 143 53.1
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 3.2e-32 144.1 410 27.1
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.3e-22 112.1 124 44.4
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-19 102.4 114 45.6
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.4e-11 75.5 209 25.4
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 3.4e-10 70.9 62 56.5
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 5.9e-10 70.1 88 46.6
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.0e-09 69.3 48 66.7
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 1.3e-09 68.9 47 66.0
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 2.7e-07 61.2 53 60.4
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.6e-07 60.8 44 63.6
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.3e-06 58.9 48 60.4


User provided reference genes

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