Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 1.7e-188 662.5 332 100.0
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.8e-126 456.4 319 72.7
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 8.2e-111 404.4 314 69.4
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.5e-109 400.2 317 68.5
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 5.5e-107 391.7 318 66.0
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 7.2e-107 391.3 317 67.5
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 5.7e-104 381.7 312 63.8
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.2e-99 365.5 316 61.1
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 6.3e-95 351.7 302 61.9
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 6.9e-94 348.2 314 59.9
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.2e-93 347.4 314 59.9
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 3.4e-93 345.9 323 61.3
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 5.9e-93 345.1 237 73.0
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.0e-92 344.4 313 57.2
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 3.8e-92 342.4 311 60.5
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 8.5e-92 341.3 313 57.5
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 8.5e-92 341.3 331 60.7
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.1e-91 340.9 304 62.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.9e-91 340.1 316 56.3
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 9.4e-91 337.8 346 54.6
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.2e-90 337.4 313 58.1
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 1.0e-89 334.3 250 68.4
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.8e-89 333.6 314 58.0
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.5e-88 330.5 320 56.9
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 2.2e-87 326.6 276 62.7
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 8.2e-87 324.7 276 63.4
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 3.1e-86 322.8 313 57.2
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 3.1e-86 322.8 262 64.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 3.1e-86 322.8 262 64.5
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 9.1e-86 321.2 243 65.8
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 2.0e-85 320.1 241 68.9
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.0e-85 320.1 276 61.2
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.6e-85 319.7 233 71.2
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 5.9e-85 318.5 305 58.4
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 7.7e-85 318.2 276 60.9
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.3e-84 317.4 260 66.5
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.7e-84 317.0 224 73.7
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 2.2e-84 316.6 276 60.9
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 3.8e-84 315.8 238 67.6
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 3.8e-84 315.8 224 73.2
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 6.5e-84 315.1 219 73.5
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.5e-83 313.2 313 54.0
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 7.2e-83 311.6 308 57.1
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.2e-82 310.8 254 63.4
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.6e-82 310.5 226 70.4
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 6.1e-82 308.5 249 60.6
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.4e-81 307.4 209 74.6
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.8e-81 307.0 254 61.0
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 2.3e-81 306.6 314 54.1
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 3.0e-81 306.2 353 53.3
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 5.7e-80 302.0 312 55.8
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 5.7e-80 302.0 253 61.3
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 5.7e-80 302.0 248 62.1
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.7e-79 300.4 211 70.1
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.7e-79 299.3 312 53.5
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.4e-78 296.6 235 62.6
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.4e-78 296.6 189 77.8
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 3.1e-78 296.2 253 60.5
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 3.1e-78 296.2 249 61.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.0e-78 295.0 251 61.0
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 7.0e-78 295.0 203 75.4
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.2e-77 294.3 224 65.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-77 293.5 251 60.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 7.7e-77 291.6 242 61.6
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.0e-76 291.2 192 74.0
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.7e-76 290.4 257 58.8
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.7e-76 290.4 204 70.6
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.7e-76 290.4 204 70.6
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 3.8e-76 289.3 249 60.6
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 5.0e-76 288.9 220 67.7
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.5e-76 288.5 253 59.7
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 8.5e-76 288.1 288 56.2
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 3.2e-75 286.2 249 60.2
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 3.2e-75 286.2 193 77.2
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 9.4e-75 284.6 262 61.1
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.2e-74 284.3 187 73.3
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.2e-74 284.3 173 79.8
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.6e-74 283.9 189 72.5
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.7e-74 283.1 197 74.1
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 6.1e-74 282.0 224 66.5
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.0e-73 281.2 205 68.8
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.0e-73 281.2 309 52.1
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.3e-73 280.0 206 68.9
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 4.0e-73 279.3 187 72.7
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 4.0e-73 279.3 187 72.7
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.2e-72 277.7 211 66.8
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.2e-72 277.7 191 73.8
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.2e-72 277.7 188 72.3
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.5e-72 277.3 281 55.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.5e-72 277.3 258 59.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.6e-72 276.6 188 71.8
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 4.4e-72 275.8 181 74.6
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 4.4e-72 275.8 181 74.6
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 5.7e-72 275.4 183 76.5
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 9.8e-72 274.6 189 70.9
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.8e-71 273.1 257 57.6
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.8e-71 273.1 187 71.1
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 6.3e-71 271.9 191 72.3
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 8.3e-71 271.6 205 67.3
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.1e-70 271.2 210 67.6
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 4.1e-70 269.2 185 71.9
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 7.0e-70 268.5 187 69.0
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.2e-69 267.7 189 69.8
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.0e-68 264.6 203 69.0
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.3e-68 264.2 167 76.0
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.1e-67 261.2 213 59.2
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 1.9e-67 260.4 203 67.0
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.9e-67 260.4 227 59.5
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 2.5e-67 260.0 175 72.6
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 8.0e-66 255.0 189 67.7
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 2.8e-63 246.5 192 67.7
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 6.3e-63 245.4 197 62.9
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 8.3e-63 245.0 159 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.4e-62 244.2 191 66.0
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 5.6e-59 232.3 132 84.8
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 3.7e-55 219.5 168 67.3
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 4.1e-54 216.1 180 60.0
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.6e-53 214.2 137 76.6
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 7.8e-53 211.8 179 59.8
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 8.6e-52 208.4 154 69.5
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.9e-51 207.2 130 79.2
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.2e-47 193.7 154 66.2
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.2e-47 193.7 107 86.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 2.1e-45 187.2 116 77.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.6e-42 176.4 251 42.2
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.9e-38 164.1 91 86.8
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.4e-38 162.5 235 44.7
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.4e-33 147.1 115 66.1
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.4e-33 147.1 115 66.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 8.9e-33 145.2 95 70.5
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 5.1e-28 129.4 147 52.4
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.2e-26 124.8 112 57.1
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 8.1e-26 122.1 135 45.2
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 5.3e-25 119.4 133 43.6
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 9.0e-25 118.6 101 61.4
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 9.0e-25 118.6 156 41.0
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.2e-21 108.2 76 71.1
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.9e-19 100.9 196 37.8
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 8.4e-15 85.5 84 56.0
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.6e-13 79.7 121 41.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 4.0e-09 66.6 41 73.2
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.3e-07 61.6 92 40.2
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 2.9e-07 60.5 111 43.2
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 5.5e-06 56.2 56 55.4


User provided reference genes

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