Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.4e-182 642.9 344 100.0
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.4e-142 508.1 344 79.7
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 7.4e-131 471.1 344 73.3
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.1e-130 469.5 345 69.6
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.8e-129 466.5 348 69.3
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 2.0e-128 463.0 344 73.8
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 8.4e-127 457.6 344 68.0
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 8.4e-127 457.6 318 75.2
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 6.0e-125 451.4 344 68.6
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.4e-121 439.5 340 67.1
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 2.6e-120 436.0 350 64.0
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 4.2e-118 428.7 360 63.3
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 5.5e-118 428.3 348 65.2
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 1.1e-115 420.6 351 62.4
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 4.3e-115 418.7 450 52.4
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 7.4e-115 417.9 346 62.4
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 3.7e-114 415.6 392 56.4
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 2.2e-111 406.4 319 67.1
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 6.5e-111 404.8 440 54.1
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 8.5e-111 404.4 360 60.8
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.6e-109 400.2 347 67.1
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 1.0e-108 397.5 389 56.3
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.5e-107 393.7 347 60.2
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 2.0e-107 393.3 330 62.7
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 2.5e-107 392.9 482 48.5
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 4.3e-107 392.1 434 52.3
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 1.7e-106 390.2 416 53.8
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.2e-106 389.8 443 51.2
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.8e-106 389.4 332 62.3
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 1.8e-105 386.7 346 60.7
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 3.1e-105 386.0 453 50.8
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 5.3e-105 385.2 354 60.7
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.3e-105 385.2 457 49.0
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 6.9e-105 384.8 439 51.5
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 9.1e-105 384.4 359 59.9
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 3.4e-104 382.5 395 55.4
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 5.9e-104 381.7 452 48.2
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 7.7e-104 381.3 452 48.2
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 1.0e-103 380.9 351 60.7
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.7e-103 380.2 345 57.1
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 2.9e-103 379.4 351 58.4
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.1e-102 377.5 399 51.1
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.4e-102 377.1 442 50.0
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 5.5e-102 375.2 472 46.8
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 7.2e-102 374.8 301 63.8
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 9.4e-102 374.4 483 46.4
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.7e-101 372.9 461 48.2
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 2.7e-101 372.9 272 75.7
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 2.7e-101 372.9 432 49.3
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 1.0e-100 370.9 477 47.0
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.8e-100 370.2 279 67.0
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 5.1e-100 368.6 374 55.3
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 1.5e-99 367.1 325 60.0
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 2.6e-99 366.3 335 57.6
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 4.4e-99 365.5 358 59.8
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.3e-98 364.0 374 53.7
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 4.1e-97 359.0 517 44.7
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 5.3e-97 358.6 346 57.2
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 7.0e-97 358.2 480 44.8
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 7.0e-97 358.2 345 56.8
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 9.1e-97 357.8 488 44.7
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.1e-97 357.8 488 44.7
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.6e-96 356.3 498 43.8
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.3e-95 354.0 509 45.0
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.5e-94 349.7 489 43.8
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.5e-94 349.7 498 42.4
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 3.2e-94 349.4 501 44.1
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 9.4e-94 347.8 427 49.9
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.6e-93 347.1 479 47.2
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.1e-93 346.7 472 44.7
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 8.0e-93 344.7 434 47.0
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 1.0e-92 344.4 501 43.3
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 1.8e-92 343.6 281 62.6
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 2.0e-91 340.1 487 44.1
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 2.6e-91 339.7 446 44.8
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.6e-91 339.7 471 45.0
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 7.5e-91 338.2 399 50.1
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.8e-89 333.6 523 41.1
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 5.9e-88 328.6 495 43.4
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.0e-87 327.8 415 46.0
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 1.7e-87 327.0 319 55.2
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.2e-87 326.6 425 47.3
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 1.1e-86 324.3 472 44.5
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 5.5e-86 322.0 346 52.6
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.3e-84 316.6 358 52.5
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.3e-84 316.6 326 56.1
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 4.0e-84 315.8 387 48.1
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 4.0e-84 315.8 387 48.1
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 3.7e-82 309.3 410 46.1
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 5.4e-81 305.4 408 46.1
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 5.0e-79 298.9 577 36.0
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 4.2e-78 295.8 421 43.9
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.2e-77 294.3 421 44.2
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 3.0e-76 289.7 453 41.3
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.6e-75 286.6 417 42.2
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.3e-74 284.3 372 46.5
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.7e-74 283.9 459 40.5
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.7e-74 283.9 595 35.0
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 6.3e-74 282.0 440 42.0
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 3.1e-73 279.6 440 41.8
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 2.0e-72 276.9 410 42.9
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 2.7e-72 276.6 441 40.8
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.7e-72 276.6 460 40.4
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 4.5e-72 275.8 455 41.1
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 2.9e-71 273.1 363 45.5
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 1.9e-70 270.4 410 42.2
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 1.9e-70 270.4 401 43.6
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 9.5e-70 268.1 311 49.5
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.2e-69 267.7 508 36.4
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.2e-69 267.7 508 36.4
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 6.8e-68 261.9 468 36.1
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.2e-67 261.2 479 36.5
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.9e-66 256.5 457 38.7
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 3.7e-66 256.1 374 42.0
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 5.9e-64 248.8 447 39.1
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.6e-62 242.3 148 83.8
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 2.8e-61 240.0 315 45.4
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 3.4e-59 233.0 345 41.7
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 5.8e-59 232.3 361 40.4
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 4.1e-57 226.1 143 76.9
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.9e-54 217.2 141 73.8
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 7.3e-54 215.3 308 43.2
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 1.4e-49 201.1 361 38.8
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 5.4e-41 172.6 217 44.7
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 7.1e-41 172.2 447 31.3
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 4.0e-36 156.4 114 69.3
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 1.9e-30 137.5 165 50.3
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 8.1e-29 132.1 352 28.7
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 4.0e-20 103.2 327 30.0
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.9e-18 97.1 74 62.2
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.1e-17 95.1 76 59.2
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.8e-15 87.8 87 51.7
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 1.5e-14 84.7 209 32.1


User provided reference genes

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