Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 0.0e+00 1342.0 836 100.0
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 0.0e+00 1196.8 838 92.8
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 1.2e-110 405.2 723 42.6
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 3.6e-99 367.1 751 39.9
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.7e-83 313.9 429 46.6
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 9.3e-79 299.3 514 43.4
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.1e-78 298.1 440 45.5
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 8.7e-77 292.7 466 45.3
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.5e-76 291.2 564 42.0
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 3.3e-76 290.8 611 37.3
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 9.6e-76 289.3 395 49.4
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 4.8e-75 287.0 553 41.0
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.1e-74 285.8 491 42.0
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 1.0e-72 279.3 544 41.9
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 5.5e-71 273.5 626 36.9
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.2e-70 272.3 402 47.5
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.0e-69 269.2 376 47.3
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.3e-69 268.1 376 47.1
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.0e-69 267.7 376 47.1
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.5e-68 265.4 376 46.8
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.3e-68 264.2 509 41.1
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.6e-67 261.9 376 47.3
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 2.2e-67 261.5 446 44.8
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 3.7e-67 260.8 620 37.4
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 3.4e-65 254.2 607 36.1
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 2.2e-64 251.5 602 36.2
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 1.6e-62 245.4 598 38.1
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 2.7e-62 244.6 598 38.1
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 6.1e-62 243.4 496 39.7
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 8.8e-61 239.6 502 37.8
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 1.7e-59 235.3 590 35.4
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 3.7e-59 234.2 530 37.7
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 4.1e-58 230.7 327 44.6
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 4.1e-58 230.7 468 40.8
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 5.3e-58 230.3 578 35.8
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 4.5e-57 227.3 444 40.3
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 4.5e-57 227.3 389 42.4
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 7.7e-57 226.5 489 38.0
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 2.2e-56 224.9 433 40.9
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 2.9e-56 224.6 377 48.3
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 5.5e-55 220.3 389 41.6
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 2.1e-54 218.4 284 52.5
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 6.7e-53 213.4 482 38.2
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 2.0e-52 211.8 490 39.0
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 3.3e-52 211.1 390 40.5
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 7.0e-50 203.4 490 38.6
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 9.1e-50 203.0 324 42.6
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 8.0e-46 189.9 366 40.7
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.4e-45 189.1 488 36.7
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 1.8e-45 188.7 387 38.5
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 4.0e-45 187.6 239 44.8
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 5.2e-45 187.2 422 33.9
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 6.7e-45 186.8 288 44.4
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 8.8e-45 186.4 403 35.0
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.5e-44 185.7 359 40.7
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 1.5e-44 185.7 404 34.4
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 7.5e-44 183.3 373 37.8
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 9.7e-44 183.0 434 35.5
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 2.8e-43 181.4 330 39.4
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 2.4e-42 178.3 420 36.2
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 3.1e-42 177.9 337 40.4
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.1e-42 177.9 425 34.8
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 5.3e-42 177.2 342 37.7
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 5.3e-42 177.2 446 33.4
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.1e-39 169.5 263 42.2
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 1.1e-39 169.5 399 33.8
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 1.1e-39 169.5 500 32.0
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.6e-38 165.6 444 35.4
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 2.1e-38 165.2 430 34.7
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 4.0e-37 161.0 528 30.5
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.7e-36 157.1 366 34.2
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 5.7e-36 157.1 386 34.2
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 9.8e-36 156.4 383 34.5
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 2.2e-35 155.2 219 42.9
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.8e-34 152.1 262 40.8
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 1.6e-33 149.1 339 33.0
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 1.6e-33 149.1 412 33.7
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 1.6e-33 149.1 357 34.7
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 5.9e-33 147.1 427 36.3
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 2.9e-32 144.8 219 42.0
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 3.2e-31 141.4 441 35.4
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 9.5e-31 139.8 267 37.8
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.0e-29 136.3 483 32.3
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 1.2e-28 132.9 337 34.7
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 5.7e-28 130.6 354 31.9
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 5.7e-28 130.6 343 35.3
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.7e-27 127.9 341 32.0
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 1.8e-26 125.6 435 31.5
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.4e-26 125.2 354 31.4
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 9.2e-26 123.2 465 31.8
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 9.2e-26 123.2 199 41.7
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.6e-25 122.5 355 32.4
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 2.3e-24 118.6 451 31.7
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 6.6e-24 117.1 139 48.9
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 4.3e-23 114.4 269 35.3
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 1.2e-22 112.8 399 32.1
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 2.1e-22 112.1 220 35.0
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 2.1e-22 112.1 220 35.0
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 2.8e-22 111.7 280 32.1
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 3.6e-22 111.3 371 29.9
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 1.4e-21 109.4 494 29.1
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 6.8e-21 107.1 345 32.8
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 4.4e-20 104.4 474 27.8
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 4.4e-20 104.4 216 33.3
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 5.7e-20 104.0 261 31.8
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 1.3e-19 102.8 260 30.8
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 9.5e-15 86.7 320 27.2
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 2.1e-14 85.5 478 28.9
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 2.8e-14 85.1 218 31.7
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 6.2e-14 84.0 131 37.4
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 4.0e-13 81.3 439 28.2
Lj6C70T8 Lonicera japonica HOM05D006954 ORTHO05D008729 5.8e-12 77.4 124 41.9
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 3.2e-10 71.6 522 26.2
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 4.1e-10 71.2 518 24.7
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.6e-09 69.3 207 29.0
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 2.7e-09 68.6 226 25.7
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 6.0e-09 67.4 565 26.4
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 2.3e-08 65.5 150 40.0
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 3.9e-08 64.7 198 27.8
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 5.0e-08 64.3 213 27.2
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 1.1e-07 63.2 201 27.9
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 1.9e-07 62.4 195 30.3
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 2.5e-07 62.0 207 28.5
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 4.3e-07 61.2 199 28.6
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 5.6e-07 60.8 104 34.6
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 9.5e-07 60.1 195 23.6
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.2e-06 59.7 195 26.2
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.2e-06 59.7 198 26.3
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.6e-06 59.3 197 29.4
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 2.8e-06 58.5 199 27.1
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 2.8e-06 58.5 198 24.7
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 3.6e-06 58.2 204 25.5
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 4.7e-06 57.8 197 23.9
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 4.7e-06 57.8 210 27.1
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.7e-06 57.8 192 26.0
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 8.1e-06 57.0 198 23.7
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 8.1e-06 57.0 204 24.0
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 8.1e-06 57.0 198 24.2


User provided reference genes

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