Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.0e-121 438.7 218 100.0
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.6e-90 335.5 212 84.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.0e-81 305.4 212 74.1
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.2e-74 283.9 219 68.5
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.1e-73 280.8 213 65.3
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.4e-72 275.8 219 64.8
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 5.1e-68 261.9 212 64.2
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.1e-65 254.2 183 68.9
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 8.3e-63 244.6 209 61.2
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 9.2e-62 241.1 241 56.4
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 3.9e-60 235.7 219 57.1
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.1e-59 234.2 222 57.2
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.5e-59 233.0 216 59.3
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 4.0e-57 225.7 215 55.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 4.0e-57 225.7 219 56.6
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 9.9e-56 221.1 212 56.1
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 6.2e-50 201.8 176 60.8
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 9.0e-49 198.0 196 54.1
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.2e-47 193.4 157 62.4
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.4e-46 189.9 223 50.7
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.7e-45 186.4 231 51.5
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.8e-39 166.0 225 44.4
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 6.4e-39 165.2 159 56.0
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 7.1e-38 161.8 233 43.8
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 9.3e-38 161.4 173 52.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.5e-35 154.1 225 41.8
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.7e-34 149.4 148 58.8
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.9e-31 139.8 161 50.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 8.4e-31 138.3 258 40.3
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 8.4e-31 138.3 181 48.6
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 7.1e-30 135.2 246 38.2
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.3e-26 124.4 234 38.5
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.6e-26 124.0 223 39.0
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.7e-26 122.9 235 37.9
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.7e-26 122.9 241 39.4
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 4.8e-26 122.5 238 37.8
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 6.2e-26 122.1 233 37.8
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 8.2e-26 121.7 242 38.4
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.1e-25 121.3 235 37.9
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.1e-25 121.3 236 38.6
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.4e-25 120.9 236 38.1
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.8e-25 120.6 237 36.3
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.8e-25 120.6 240 37.9
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 1.8e-25 120.6 227 38.3
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.4e-25 120.2 226 38.5
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.4e-25 120.2 227 38.3
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 3.1e-25 119.8 238 38.7
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 3.1e-25 119.8 232 38.4
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 4.0e-25 119.4 228 39.0
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 5.3e-25 119.0 231 38.1
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 5.3e-25 119.0 233 36.5
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.9e-25 118.6 238 37.0
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 6.9e-25 118.6 233 38.2
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 9.0e-25 118.2 231 36.8
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 9.0e-25 118.2 238 38.2
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.0e-25 118.2 236 37.3
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 9.0e-25 118.2 240 36.7
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.2e-24 117.9 238 38.2
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.2e-24 117.9 230 36.5
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.0e-24 117.1 235 37.4
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.0e-24 117.1 234 37.6
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.0e-24 117.1 231 36.8
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 2.6e-24 116.7 240 36.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.6e-24 116.7 234 38.5
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 2.6e-24 116.7 235 37.9
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.4e-24 116.3 233 36.1
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.4e-24 116.3 234 36.8
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 3.4e-24 116.3 234 36.8
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.4e-24 116.3 237 38.4
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 4.5e-24 115.9 242 36.4
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 4.5e-24 115.9 225 38.2
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 4.5e-24 115.9 239 38.1
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.5e-24 115.9 230 34.8
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 4.5e-24 115.9 242 35.1
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 5.8e-24 115.5 232 36.6
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 7.6e-24 115.2 232 37.1
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 7.6e-24 115.2 231 35.5
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 7.6e-24 115.2 231 39.0
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.0e-23 114.8 235 35.7
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.0e-23 114.8 233 36.5
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.0e-23 114.8 236 35.6
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.0e-23 114.8 239 36.8
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.0e-23 114.8 236 37.7
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.3e-23 114.4 59 88.1
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 2.2e-23 113.6 235 36.6
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.2e-23 113.6 235 34.5
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.2e-23 113.6 237 37.1
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.2e-23 113.6 233 37.8
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.9e-23 113.2 237 37.6
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.9e-23 113.2 233 37.8
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.9e-23 112.5 228 36.0
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 6.5e-23 112.1 248 36.7
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 6.5e-23 112.1 228 36.8
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.5e-23 112.1 239 37.2
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 6.5e-23 112.1 234 36.8
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 8.4e-23 111.7 259 35.5
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 8.4e-23 111.7 239 37.2
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.1e-22 111.3 226 37.2
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.1e-22 111.3 239 37.2
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-22 111.3 239 37.2
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-22 111.3 239 37.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.1e-22 111.3 240 36.7
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.4e-22 110.9 235 35.7
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.9e-22 110.5 237 36.3
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.9e-22 110.5 234 36.8
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.9e-22 110.5 216 38.4
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 1.9e-22 110.5 221 38.5
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.9e-22 110.5 219 38.4
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.9e-22 110.5 235 37.0
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 4.2e-22 109.4 236 34.7
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 7.1e-22 108.6 242 35.1
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 7.1e-22 108.6 217 35.9
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 7.1e-22 108.6 239 33.9
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 9.3e-22 108.2 239 34.7
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.2e-21 107.8 237 38.0
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-21 107.8 235 35.3
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.6e-21 107.5 194 37.1
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.6e-21 107.5 242 35.1
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.6e-21 107.5 242 35.1
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.6e-21 107.5 236 40.3
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.6e-21 107.5 231 35.1
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 2.1e-21 107.1 239 35.1
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.1e-21 107.1 242 35.1
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.7e-21 106.7 234 35.0
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.7e-21 106.7 235 37.4
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 2.7e-21 106.7 246 35.0
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.5e-21 106.3 237 34.6
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 3.5e-21 106.3 232 34.9
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 6.0e-21 105.5 255 36.1
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.3e-20 104.4 237 35.9
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.8e-20 104.0 236 33.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.8e-20 104.0 225 39.1
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.8e-20 104.0 235 35.7
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 2.3e-20 103.6 239 35.6
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 3.0e-20 103.2 241 36.9
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 3.9e-20 102.8 219 34.7
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 5.1e-20 102.4 230 38.3
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 8.7e-20 101.7 232 32.8
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 8.7e-20 101.7 228 34.6
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.1e-19 101.3 239 36.8
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.1e-19 101.3 241 35.7
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.5e-19 100.9 220 37.7
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.9e-19 100.5 234 34.6
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.9e-19 100.5 229 32.8
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 3.3e-19 99.8 240 32.9
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 7.4e-19 98.6 230 35.7
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 7.4e-19 98.6 215 36.7
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 9.7e-19 98.2 243 34.6
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.6e-18 97.4 208 36.5
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 2.2e-18 97.1 214 33.6
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 3.7e-18 96.3 211 35.1
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.4e-17 94.4 227 31.3
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 4.1e-17 92.8 194 36.6
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.2e-16 91.3 222 30.6
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.2e-16 91.3 214 36.0
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 2.0e-16 90.5 225 33.8
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.5e-16 89.4 218 33.5
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 5.5e-14 82.4 211 34.6
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 7.2e-14 82.0 295 28.8
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 6.3e-10 68.9 177 34.5
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.4e-09 67.8 37 75.7
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.2e-08 64.7 195 34.9
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.5e-08 64.3 195 28.7
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.6e-08 63.5 172 30.8
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 5.9e-08 62.4 172 32.6
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 7.7e-08 62.0 48 56.2
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 2.9e-07 60.1 147 34.0
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 3.8e-07 59.7 35 65.7
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 4.2e-06 56.2 139 33.8
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 4.2e-06 56.2 116 32.8
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 5.5e-06 55.8 61 42.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.5e-06 55.8 171 29.2


User provided reference genes

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