Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 9.0e-119 430.3 214 100.0
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 3.3e-81 305.4 219 69.9
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 4.1e-79 298.5 225 65.8
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 2.9e-77 292.4 217 66.8
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 4.2e-76 288.5 205 69.8
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 1.6e-70 270.0 231 61.5
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 5.9e-70 268.1 218 62.4
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 1.0e-69 267.3 217 59.9
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 2.2e-69 266.2 220 58.2
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 6.5e-69 264.6 232 59.1
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 3.2e-68 262.3 224 59.8
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 1.2e-67 260.4 224 59.4
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 6.1e-67 258.1 224 58.9
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 2.3e-66 256.1 226 59.3
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 2.3e-66 256.1 222 59.5
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 5.2e-66 255.0 224 58.9
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.5e-65 253.4 225 58.7
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 2.2e-64 249.6 229 57.6
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 2.2e-64 249.6 226 58.4
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 3.7e-64 248.8 224 59.4
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 1.1e-63 247.3 238 57.1
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 2.4e-63 246.1 228 55.3
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 1.6e-62 243.4 227 53.7
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 2.0e-62 243.0 206 59.7
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 1.7e-61 240.0 228 57.0
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 8.5e-61 237.7 227 55.5
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 2.5e-60 236.1 233 57.5
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 1.6e-59 233.4 237 52.7
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 6.1e-59 231.5 226 54.4
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 1.8e-58 229.9 236 53.0
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 2.3e-58 229.6 229 55.5
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 4.0e-58 228.8 229 53.7
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 4.0e-58 228.8 226 54.9
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 5.2e-58 228.4 222 55.0
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 1.5e-57 226.9 218 54.6
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 2.2e-56 223.0 243 50.2
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 2.2e-56 223.0 242 52.5
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 2.2e-56 223.0 221 51.1
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 2.2e-56 223.0 229 52.0
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 3.1e-55 219.2 225 51.1
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 9.1e-55 217.6 257 45.9
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 4.5e-54 215.3 226 54.0
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 1.0e-53 214.2 217 53.5
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 3.8e-53 212.2 217 52.5
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 2.5e-52 209.5 217 52.1
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 2.1e-51 206.5 227 46.3
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 3.6e-51 205.7 237 48.5
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 3.6e-51 205.7 237 48.5
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 4.7e-51 205.3 235 49.8
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 1.4e-50 203.8 226 49.6
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 2.3e-50 203.0 234 46.6
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 5.2e-50 201.8 234 46.2
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 6.8e-50 201.4 234 46.2
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 8.8e-50 201.1 222 49.5
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 8.8e-50 201.1 232 46.6
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 1.2e-49 200.7 234 45.7
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 2.6e-49 199.5 223 46.6
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 4.4e-49 198.7 234 45.3
Ah.12g056480 Amaranthus hybridus HOM05D006860 ORTHO05D009547 7.5e-49 198.0 187 51.9
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 9.8e-49 197.6 233 45.9
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 1.3e-48 197.2 240 45.8
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 1.7e-48 196.8 232 46.1
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 1.7e-48 196.8 224 48.2
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 3.7e-48 195.7 241 44.0
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 4.9e-48 195.3 232 47.0
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 8.3e-48 194.5 228 46.1
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 2.4e-47 193.0 227 47.1
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 4.1e-47 192.2 216 48.6
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 9.2e-47 191.0 252 45.6
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 9.2e-47 191.0 243 42.8
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 4.5e-46 188.7 231 45.9
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 1.0e-45 187.6 213 48.4
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 8.6e-45 184.5 251 43.4
HPP92_025643 Vanilla planifolia HOM05D006860 ORTHO05D009547 3.3e-44 182.6 199 50.3
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 4.3e-44 182.2 211 48.3
TPR.G24674 Trifolium pratense HOM05D006860 ORTHO05D009547 6.1e-43 178.3 214 44.4
PGR031G3062 Punica granatum HOM05D006860 ORTHO05D009547 1.8e-42 176.8 214 49.5
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 2.6e-41 172.9 195 47.7
Actinidia27452 Actinidia chinensis HOM05D006860 ORTHO05D009547 8.3e-40 167.9 175 50.3
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 2.4e-31 139.8 116 56.0
Sc07g0009390 Simmondsia chinensis HOM05D000685 ORTHO05D000511 9.2e-31 137.9 183 45.4
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 8.1e-27 124.8 129 48.1
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 7.5e-25 118.2 194 36.6
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 2.2e-24 116.7 210 35.2
Sp7g20630 Schrenkiella parvula HOM05D006860 ORTHO05D015488 1.7e-21 107.1 184 37.0
Ciclev10023898m.g Citrus clementina HOM05D006860 ORTHO05D009547 5.1e-21 105.5 121 47.1
BraA03t14425Z Brassica rapa HOM05D006860 ORTHO05D015488 1.9e-20 103.6 194 37.1
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 2.5e-20 103.2 141 42.6
BcaNung01686 Brassica carinata HOM05D006860 ORTHO05D009547 5.6e-20 102.1 196 36.2
A03p53590 Brassica napus HOM05D006860 ORTHO05D015488 1.2e-19 100.9 195 36.9
BraA03t14423Z Brassica rapa HOM05D006860 ORTHO05D028065 4.7e-19 99.0 191 35.1
BcaNung01688 Brassica carinata HOM05D006860 ORTHO05D015488 1.1e-18 97.8 183 32.2
A03p53570 Brassica napus HOM05D006860 ORTHO05D028065 1.1e-18 97.8 191 35.1
C07p51910 Brassica napus HOM05D006860 ORTHO05D028065 1.4e-18 97.4 191 35.1
Carub.0008s2329 Capsella rubella HOM05D006860 ORTHO05D009547 5.2e-18 95.5 203 30.5
BcaB03g15468 Brassica carinata HOM05D000561 ORTHO05D009547 1.2e-17 94.4 200 33.0
BcaNung02490 Brassica carinata HOM05D006860 ORTHO05D015488 1.5e-17 94.0 193 35.2
A03p53560 Brassica napus HOM05D006860 ORTHO05D015488 1.5e-17 94.0 185 31.9
BolC7t45689H Brassica oleracea HOM05D006860 ORTHO05D015488 2.0e-17 93.6 182 33.0
BcaNung01685 Brassica carinata HOM05D006860 ORTHO05D009547 3.4e-17 92.8 194 33.0
C07p51900 Brassica napus HOM05D006860 ORTHO05D015488 3.4e-17 92.8 182 33.0
BcaNung02492 Brassica carinata HOM05D006860 ORTHO05D015488 4.4e-17 92.4 182 32.4
BraA03t14422Z Brassica rapa HOM05D006860 ORTHO05D015488 5.8e-17 92.0 185 31.4
C07p51920 Brassica napus HOM05D006860 ORTHO05D015488 9.9e-17 91.3 194 33.5
BolC7t45692H Brassica oleracea HOM05D006860 ORTHO05D015488 9.9e-17 91.3 194 33.5
BolC7t45690H Brassica oleracea HOM05D006860 ORTHO05D028065 2.2e-16 90.1 191 33.5
BcaB03g15470 Brassica carinata HOM05D006860 ORTHO05D009547 1.9e-15 87.0 200 31.0
EL10Ac8g19726 Beta vulgaris HOM05D006860 ORTHO05D009547 7.1e-15 85.1 50 74.0
Ciclev10010734m.g Citrus clementina HOM05D006860 ORTHO05D009547 5.1e-13 79.0 110 40.9
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 2.8e-11 73.2 59 57.6
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 5.2e-10 68.9 58 55.2
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 1.5e-09 67.4 66 47.0
SMO271G0144 Selaginella moellendorffii HOM05D000828 ORTHO05D000623 2.6e-09 66.6 204 27.0
Ciclev10018172m.g Citrus clementina HOM05D006860 ORTHO05D009547 3.4e-09 66.2 58 51.7
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 1.7e-08 63.9 81 38.3
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 8.4e-08 61.6 70 45.7
Aqoxy4G02525 Aquilegia oxysepala HOM05D000828 ORTHO05D000623 2.4e-07 60.1 181 23.8
Sopen10g034680 Solanum pennellii HOM05D000828 ORTHO05D000623 7.1e-07 58.5 190 26.3
Nitab4.5_0000496g0170 Nicotiana tabacum HOM05D000828 ORTHO05D000623 1.2e-06 57.8 210 25.2
ATR0012G056 Amborella trichopoda HOM05D000828 ORTHO05D000623 1.6e-06 57.4 188 27.7
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 2.1e-06 57.0 187 24.1
FAN28G2246 Fragaria x ananassa HOM05D000828 ORTHO05D000623 3.5e-06 56.2 75 40.0
FAN19G1830 Fragaria x ananassa HOM05D000828 ORTHO05D000623 4.6e-06 55.8 61 42.6
FvH4_1g25360 Fragaria vesca HOM05D000828 ORTHO05D000623 6.0e-06 55.5 61 42.6
FAN23G1352 Fragaria x ananassa HOM05D000828 ORTHO05D000623 6.0e-06 55.5 61 42.6
FAN26G0989 Fragaria x ananassa HOM05D000828 ORTHO05D000623 6.0e-06 55.5 61 42.6
Peaxi162Scf00353g00023 Petunia axillaris HOM05D000828 ORTHO05D000623 6.0e-06 55.5 56 37.5
Ciclev10003662m.g Citrus clementina HOM05D000828 ORTHO05D000623 7.8e-06 55.1 60 38.3


User provided reference genes

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