Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0342 Trochodendron aralioides HOM05D000326 ORTHO05D003748 6.7e-41 170.2 86 100.0
TAR626G1478 Trochodendron aralioides HOM05D000326 ORTHO05D003748 1.3e-28 129.4 86 81.4
ClCG01G009940 Citrullus lanatus HOM05D000326 ORTHO05D003748 2.7e-26 121.7 86 73.3
COL.COLO4_31858 Corchorus olitorius HOM05D000326 ORTHO05D003748 2.7e-26 121.7 86 74.4
Lj1A1238T58 Lonicera japonica HOM05D000326 ORTHO05D003748 3.6e-26 121.3 86 73.3
MELO3C021704.2 Cucumis melo HOM05D000326 ORTHO05D003748 4.7e-26 120.9 86 73.3
CSS0023135 Camellia sinensis var. sinensis HOM05D000326 ORTHO05D003748 6.1e-26 120.6 86 73.3
CDE04G1138 Ceratophyllum demersum HOM05D000326 ORTHO05D003748 8.0e-26 120.2 86 73.3
Manes.16G001800 Manihot esculenta HOM05D000326 ORTHO05D003748 1.0e-25 119.8 86 72.1
Manes.09G026500 Manihot esculenta HOM05D000326 ORTHO05D003748 1.8e-25 119.0 86 70.9
CsaV3_1G045840 Cucumis sativus L. HOM05D000326 ORTHO05D003748 3.0e-25 118.2 86 70.9
Hma1.2p1_0660F.1_g197520 Hydrangea macrophylla HOM05D000326 ORTHO05D003748 4.0e-25 117.9 87 73.6
Hund23413 Selenicereus undatus HOM05D000326 ORTHO05D003748 4.0e-25 117.9 86 69.8
SGA_v2.0_scaffold89G27492 Striga asiatica HOM05D000326 ORTHO05D003748 4.0e-25 117.9 86 72.1
Duzib192G0921 Durio zibethinus HOM05D000326 ORTHO05D003748 6.7e-25 117.1 86 72.1
TWI38G0552 Tripterygium wilfordii HOM05D000326 ORTHO05D003748 8.8e-25 116.7 86 70.9
Sed0028075 Sechium edule HOM05D000326 ORTHO05D003748 1.2e-24 116.3 86 69.8
GSVIVG01013254001 Vitis vinifera HOM05D000326 ORTHO05D003748 1.2e-24 116.3 86 69.8
Nn1g03354 Nelumbo nucifera HOM05D000326 ORTHO05D003748 1.5e-24 115.9 86 72.1
TAR624G0942 Trochodendron aralioides HOM05D000326 ORTHO05D003748 1.5e-24 115.9 86 73.3
MSTRG.14619 Avicennia marina HOM05D000326 ORTHO05D003748 2.0e-24 115.5 86 67.4
Cc09_g01030 Coffea canephora HOM05D000326 ORTHO05D003748 2.0e-24 115.5 86 72.1
PGR004G1603 Punica granatum HOM05D000326 ORTHO05D003748 2.0e-24 115.5 86 70.9
QL03p008407 Quercus lobata HOM05D000326 ORTHO05D003748 2.0e-24 115.5 85 69.4
QL05p069854 Quercus lobata HOM05D000182 ORTHO05D003748 2.0e-24 115.5 85 69.4
QL10p003427 Quercus lobata HOM05D000182 ORTHO05D003748 2.0e-24 115.5 85 69.4
vmacro15785 Vaccinium macrocarpon HOM05D000326 ORTHO05D003748 2.0e-24 115.5 86 69.8
vmacro23325 Vaccinium macrocarpon HOM05D000326 ORTHO05D003748 2.0e-24 115.5 86 69.8
Lsat_1_v5_gn_0_39500 Lactuca sativa HOM05D000326 ORTHO05D003748 2.6e-24 115.2 84 71.4
PSO017G5127 Papaver somniferum HOM05D000326 ORTHO05D003748 2.6e-24 115.2 86 70.9
VMungo1215G0871 Vigna mungo HOM05D000326 ORTHO05D003748 2.6e-24 115.2 86 69.8
Aqoxy1G04159 Aquilegia oxysepala HOM05D000326 ORTHO05D003748 3.3e-24 114.8 86 72.1
CARHR253480 Cardamine hirsuta HOM05D000326 ORTHO05D003748 3.3e-24 114.8 86 72.1
SalBow1G6431 Salvia bowleyana HOM05D000326 ORTHO05D003748 3.3e-24 114.8 86 68.6
DCAR_004868 Daucus carota HOM05D000326 ORTHO05D003748 4.4e-24 114.4 86 69.8
Rhsim02G0104500 Rhododendron simsii HOM05D000326 ORTHO05D003748 4.4e-24 114.4 86 69.8
PSO675G4503 Papaver somniferum HOM05D000326 ORTHO05D003748 5.7e-24 114.0 86 69.8
Ah.14g087770 Amaranthus hybridus HOM05D000326 ORTHO05D003748 7.5e-24 113.6 86 70.9
Migut.H01598 Erythranthe guttata HOM05D000326 ORTHO05D003748 7.5e-24 113.6 86 67.4
HanXRQChr10g0282041 Helianthus annuus HOM05D000326 ORTHO05D003748 7.5e-24 113.6 86 69.8
MD10G1329100 Malus domestica HOM05D000326 ORTHO05D003748 7.5e-24 113.6 86 69.8
Solyc04g014670.3 Solanum lycopersicum HOM05D000326 ORTHO05D003748 9.7e-24 113.2 86 68.6
Sopen04g006770 Solanum pennellii HOM05D000326 ORTHO05D003748 9.7e-24 113.2 86 68.6
AUR62012777 Chenopodium quinoa HOM05D000326 ORTHO05D003748 1.3e-23 112.8 86 68.6
AUR62021879 Chenopodium quinoa HOM05D000326 ORTHO05D003748 1.3e-23 112.8 86 68.6
Cc04_g03920 Coffea canephora HOM05D000326 ORTHO05D003748 1.3e-23 112.8 86 70.9
Eucgr.E03957 Eucalyptus grandis HOM05D000326 ORTHO05D003748 1.3e-23 112.8 86 68.6
MBI19_g29452_MAGBIO Magnolia biondii HOM05D000326 ORTHO05D003748 1.3e-23 112.8 86 67.4
Nitab4.5_0000574g0280 Nicotiana tabacum HOM05D000326 ORTHO05D003748 1.3e-23 112.8 86 67.4
SalBow1G6402 Salvia bowleyana HOM05D000326 ORTHO05D003748 1.3e-23 112.8 86 67.4
Phvul.003G082700 Phaseolus vulgaris HOM05D000326 ORTHO05D003748 2.2e-23 112.1 86 68.6
Prupe.4G012900 Prunus persica HOM05D000326 ORTHO05D003748 2.2e-23 112.1 86 69.8
Atru.chr1.2493 Acer truncatum HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 67.4
BcaB03g11725 Brassica carinata HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 69.8
A09p26600 Brassica napus HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 69.8
BraA09t38233Z Brassica rapa HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 69.8
COL.COLO4_31856 Corchorus olitorius HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 70.9
Peaxi162Scf00558g00111 Petunia axillaris HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 68.6
Sabra11G0013600 Salix brachista HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 66.3
Sp6g04810 Schrenkiella parvula HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 69.8
Thecc.06G231100 Theobroma cacao HOM05D000326 ORTHO05D003748 2.8e-23 111.7 86 69.8
QL05p069860 Quercus lobata HOM05D000326 ORTHO05D003748 3.7e-23 111.3 85 68.2
QL10p003421 Quercus lobata HOM05D000326 ORTHO05D003748 3.7e-23 111.3 85 68.2
arahy.Tifrunner.gnm1.ann1.1L9BHC Arachis hypogaea HOM05D000326 ORTHO05D003748 4.8e-23 110.9 85 65.9
arahy.Tifrunner.gnm1.ann1.GK2FLE Arachis hypogaea HOM05D000326 ORTHO05D003748 4.8e-23 110.9 85 65.9
BcaC01g00769 Brassica carinata HOM05D000326 ORTHO05D003748 4.8e-23 110.9 86 68.6
C03p84080 Brassica napus HOM05D000326 ORTHO05D003748 4.8e-23 110.9 86 68.6
Carub.0006s3199 Capsella rubella HOM05D000326 ORTHO05D003748 4.8e-23 110.9 86 68.6
Thhalv10028901m.g Eutrema salsugineum HOM05D000326 ORTHO05D003748 4.8e-23 110.9 86 69.8
MD05G1355800 Malus domestica HOM05D000326 ORTHO05D003748 4.8e-23 110.9 86 67.4
Peaxi162Scf00442g00526 Petunia axillaris HOM05D000326 ORTHO05D003748 4.8e-23 110.9 86 66.3
BcaB01g01773 Brassica carinata HOM05D000326 ORTHO05D003748 6.3e-23 110.5 86 69.8
BcaC04g21261 Brassica carinata HOM05D000326 ORTHO05D003748 6.3e-23 110.5 86 69.8
C09p33720 Brassica napus HOM05D000326 ORTHO05D003748 6.3e-23 110.5 86 69.8
BolC3t20687H Brassica oleracea HOM05D000326 ORTHO05D003748 6.3e-23 110.5 86 67.4
BolC9t56206H Brassica oleracea HOM05D000326 ORTHO05D003748 6.3e-23 110.5 86 69.8
Glyma.17G009400 Glycine max HOM05D000326 ORTHO05D003748 6.3e-23 110.5 86 67.4
Oeu007162.2 Olea europaea HOM05D000326 ORTHO05D003748 6.3e-23 110.5 86 65.1
Potri.011G022400 Populus trichocarpa HOM05D000326 ORTHO05D003748 6.3e-23 110.5 86 66.3
CANSAT56G0392 Cannabis sativa HOM05D000182 ORTHO05D003748 8.3e-23 110.2 86 67.4
Lalb_Chr07g0177031 Lupinus albus HOM05D000326 ORTHO05D003748 8.3e-23 110.2 86 67.4
Rhsim02G0104400 Rhododendron simsii HOM05D000326 ORTHO05D003748 8.3e-23 110.2 86 66.3
CAN.G1263.7 Capsicum annuum HOM05D000326 ORTHO05D003748 1.1e-22 109.8 86 65.1
MD05G1355400 Malus domestica HOM05D000326 ORTHO05D003748 1.1e-22 109.8 86 67.4
Potri.011G022500 Populus trichocarpa HOM05D000326 ORTHO05D003748 1.1e-22 109.8 86 65.1
Sabra11G0013500 Salix brachista HOM05D000326 ORTHO05D003748 1.1e-22 109.8 86 65.1
A08p15630 Brassica napus HOM05D000326 ORTHO05D003748 1.4e-22 109.4 86 67.4
BraA08t33543Z Brassica rapa HOM05D000326 ORTHO05D003748 1.4e-22 109.4 86 67.4
Ca_21053_v3 Cicer arietinum L. HOM05D000326 ORTHO05D003748 1.8e-22 109.0 86 67.4
ECA248G1340 Erigeron canadensis HOM05D000326 ORTHO05D003748 1.8e-22 109.0 86 67.4
Lj4g0020890 Lotus japonicus HOM05D000326 ORTHO05D003748 1.8e-22 109.0 86 66.3
QL03p008385 Quercus lobata HOM05D000326 ORTHO05D003748 1.8e-22 109.0 85 67.1
AL6G47670 Arabidopsis lyrata HOM05D000326 ORTHO05D003748 2.4e-22 108.6 86 68.6
AT4G05530 Arabidopsis thaliana HOM05D000326 ORTHO05D003748 2.4e-22 108.6 86 68.6
Nitab4.5_0008006g0010 Nicotiana tabacum HOM05D000182 ORTHO05D003748 2.4e-22 108.6 86 65.1
Psat4g003600 Pisum sativum HOM05D000326 ORTHO05D003748 2.4e-22 108.6 86 65.1
Sabra11G0013700 Salix brachista HOM05D000182 ORTHO05D003748 2.4e-22 108.6 86 64.0
Thecc.06G231000 Theobroma cacao HOM05D000326 ORTHO05D003748 2.4e-22 108.6 86 68.6
FvH4_3g01160 Fragaria vesca HOM05D000326 ORTHO05D003748 3.1e-22 108.2 86 66.3
FAN25G3275 Fragaria x ananassa HOM05D000326 ORTHO05D003748 3.1e-22 108.2 86 65.1
Aa31LG9G10000 Aethionema arabicum HOM05D000326 ORTHO05D003748 4.1e-22 107.8 86 66.3
Medtr4g132850 Medicago truncatula HOM05D000326 ORTHO05D003748 4.1e-22 107.8 86 66.3
THA.LOC104813498 Tarenaya hassleriana HOM05D000326 ORTHO05D003748 5.3e-22 107.5 86 68.6
Haze_06896 Corylus avellana HOM05D000182 ORTHO05D003748 7.0e-22 107.1 86 66.3
Gohir.A10G010200 Gossypium hirsutum HOM05D000326 ORTHO05D003748 7.0e-22 107.1 86 65.1
Gohir.D10G009900 Gossypium hirsutum HOM05D000326 ORTHO05D003748 7.0e-22 107.1 86 65.1
Gorai.011G010800 Gossypium raimondii HOM05D000326 ORTHO05D003748 7.0e-22 107.1 86 65.1
Cpa.g.sc75.124 Carica papaya HOM05D000326 ORTHO05D003748 9.1e-22 106.7 86 65.1
Duzib235G0545 Durio zibethinus HOM05D000326 ORTHO05D003748 9.1e-22 106.7 86 67.4
Oeu002754.1 Olea europaea HOM05D000326 ORTHO05D003748 9.1e-22 106.7 86 64.0
RcHm_v2.0_Chr5g0001721 Rosa chinensis HOM05D000326 ORTHO05D003748 9.1e-22 106.7 86 65.1
TPR.G37042 Trifolium pratense HOM05D000326 ORTHO05D003748 9.1e-22 106.7 86 65.1
CAN.G1186.14 Capsicum annuum HOM05D000182 ORTHO05D003748 1.2e-21 106.3 86 66.3
Peaxi162Scf00990g00125 Petunia axillaris HOM05D000182 ORTHO05D003748 1.2e-21 106.3 86 64.0
Cfa000128 Carpinus fangiana HOM05D000182 ORTHO05D003748 2.0e-21 105.5 86 65.1
FAN21G2425 Fragaria x ananassa HOM05D000326 ORTHO05D003748 2.0e-21 105.5 86 64.0
unitig_61.g26095 Utricularia gibba HOM05D000326 ORTHO05D003748 5.9e-21 104.0 85 62.4
Zm00001eb294750 Zea mays HOM05D000326 ORTHO05D003748 5.9e-21 104.0 86 61.6
Zm00001eb305490 Zea mays HOM05D000326 ORTHO05D003748 7.7e-21 103.6 86 62.8
Cpa.g.sc75.125 Carica papaya HOM05D000326 ORTHO05D003748 1.0e-20 103.2 86 64.0
Ciclev10016358m.g Citrus clementina HOM05D000326 ORTHO05D003748 1.0e-20 103.2 86 66.3
HanXRQChr01g0006611 Helianthus annuus HOM05D000326 ORTHO05D003748 1.3e-20 102.8 86 62.8
Gohir.D05G176700 Gossypium hirsutum HOM05D000326 ORTHO05D003748 1.7e-20 102.4 86 66.3
Gorai.009G182100 Gossypium raimondii HOM05D000326 ORTHO05D003748 1.7e-20 102.4 86 66.3
PGSC0003DMG400013266 Solanum tuberosum HOM05D000182 ORTHO05D003748 1.7e-20 102.4 86 64.0
unitig_61.g26094 Utricularia gibba HOM05D000326 ORTHO05D003748 1.7e-20 102.4 86 60.5
AagrBONN_evm.TU.Sc2ySwM_228.2394 Anthoceros agrestis HOM05D000326 ORTHO05D003748 2.2e-20 102.1 86 61.6
Gohir.A05G173700 Gossypium hirsutum HOM05D000326 ORTHO05D003748 2.2e-20 102.1 86 66.3
Gohir.A10G010100 Gossypium hirsutum HOM05D000326 ORTHO05D003748 2.2e-20 102.1 86 65.1
HanXRQChr15g0470861 Helianthus annuus HOM05D000326 ORTHO05D003748 3.8e-20 101.3 86 64.0
QL03p008379 Quercus lobata HOM05D000326 ORTHO05D003748 3.8e-20 101.3 85 64.7
Gohir.D10G009800 Gossypium hirsutum HOM05D000326 ORTHO05D003748 5.0e-20 100.9 86 64.0
ATR1128G081 Amborella trichopoda HOM05D000326 ORTHO05D003748 1.1e-19 99.8 86 61.6
EL10Ac8g20163 Beta vulgaris HOM05D000326 ORTHO05D003748 1.1e-19 99.8 86 58.1
DCAR_030879 Daucus carota HOM05D000182 ORTHO05D003748 1.1e-19 99.8 86 61.6
CiPaw.10G076300 Carya illinoinensis HOM05D000182 ORTHO05D003748 1.5e-19 99.4 86 60.5
MBI19_g29453_MAGBIO Magnolia biondii HOM05D000326 ORTHO05D003748 1.9e-19 99.0 75 68.0
arahy.Tifrunner.gnm1.ann1.5KTK5R Arachis hypogaea HOM05D000182 ORTHO05D003748 2.5e-19 98.6 86 60.5
Glyma.15G113300 Glycine max HOM05D000182 ORTHO05D003748 3.2e-19 98.2 86 60.5
Phvul.006G144400 Phaseolus vulgaris HOM05D000182 ORTHO05D003748 3.2e-19 98.2 86 60.5
Pp3c18_20320 Physcomitrium patens HOM05D000326 ORTHO05D003748 3.2e-19 98.2 86 60.5
SMO364G0844 Selaginella moellendorffii HOM05D000326 ORTHO05D003748 4.2e-19 97.8 86 61.6
Duzib235G0859 Durio zibethinus HOM05D000182 ORTHO05D003748 9.4e-19 96.7 77 67.5
Glyma.09G008900 Glycine max HOM05D000182 ORTHO05D003748 9.4e-19 96.7 86 59.3
Mapoly0189s0004 Marchantia polymorpha HOM05D000326 ORTHO05D003748 1.6e-18 95.9 86 55.8
Os09g0133200 Oryza sativa ssp. japonica HOM05D000326 ORTHO05D003748 3.6e-18 94.7 86 55.8
VMungo0540G1586 Vigna mungo HOM05D000182 ORTHO05D003748 4.7e-18 94.4 86 58.1
Lj6g0028133 Lotus japonicus HOM05D000182 ORTHO05D003748 1.8e-17 92.4 86 55.8
AUR62021878 Chenopodium quinoa HOM05D000326 ORTHO05D003748 4.0e-17 91.3 86 54.7
CANSAT56G1453 Cannabis sativa HOM05D000326 ORTHO05D003748 8.8e-17 90.1 88 55.7
CANSAT56G0281 Cannabis sativa HOM05D000326 ORTHO05D003748 2.0e-16 89.0 86 55.8
TAR375G0713 Trochodendron aralioides HOM05D000326 ORTHO05D003748 2.0e-16 89.0 86 61.6
DCAR_002211 Daucus carota HOM05D000326 ORTHO05D003748 4.4e-16 87.8 70 68.6
CANSAT56G0433 Cannabis sativa HOM05D000326 ORTHO05D003748 1.7e-15 85.9 86 54.7
CBR_g38950 Chara braunii HOM05D000326 ORTHO05D003748 2.2e-15 85.5 87 55.2
PSO210G3324 Papaver somniferum HOM05D000326 ORTHO05D003748 3.7e-15 84.7 86 53.5
Lsat_1_v5_gn_7_14601 Lactuca sativa HOM05D000326 ORTHO05D003748 6.3e-15 84.0 70 62.9
ECA248G0644 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.4e-14 80.9 75 56.0
EL10Ac8g20162 Beta vulgaris HOM05D000326 ORTHO05D003748 5.9e-13 77.4 47 85.1
Actinidia02329 Actinidia chinensis HOM05D002186 ORTHO05D003748 5.0e-12 74.3 47 80.9
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 5.5e-11 70.9 63 58.7
SEGI_20143 Sequoiadendron giganteum HOM05D000326 ORTHO05D003748 6.1e-10 67.4 47 72.3
Nitab4.5_0000143g0480 Nicotiana tabacum HOM05D000182 ORTHO05D003748 1.8e-09 65.9 47 70.2
Cre03.g191850 Chlamydomonas reinhardtii HOM05D000326 ORTHO05D003748 2.3e-09 65.5 81 44.4
Nitab4.5_0001198g0220 Nicotiana tabacum HOM05D000326 ORTHO05D003748 3.0e-09 65.1 47 68.1
BcaC05g24979 Brassica carinata HOM05D000326 ORTHO05D003748 6.8e-09 63.9 56 58.9
arahy.Tifrunner.gnm1.ann1.C9QTWM Arachis hypogaea HOM05D000182 ORTHO05D003748 3.4e-08 61.6 61 52.5
Dinv07384 Davidia involucrata HOM05D000326 ORTHO05D003748 4.9e-07 57.8 30 83.3
Ciclev10017501m.g Citrus clementina HOM05D000326 ORTHO05D003748 3.1e-06 55.1 31 74.2
AUR62012778 Chenopodium quinoa HOM05D000326 ORTHO05D003748 7.0e-06 53.9 48 58.3
Actinidia26875 Actinidia chinensis HOM05D002186 ORTHO05D002225 9.2e-06 53.5 42 59.5


User provided reference genes

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