Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0266 Trochodendron aralioides HOM05D000998 ORTHO05D000806 7.8e-52 206.8 104 100.0
TAR374G0813 Trochodendron aralioides HOM05D000998 ORTHO05D000806 9.3e-21 103.6 182 39.0
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 1.2e-20 103.2 96 59.4
Actinidia34111 Actinidia chinensis HOM05D000998 ORTHO05D000806 8.7e-19 97.1 182 36.8
Nn6g33504 Nelumbo nucifera HOM05D000998 ORTHO05D000806 1.3e-17 93.2 168 38.7
Gohir.A08G099400 Gossypium hirsutum HOM05D000998 ORTHO05D000806 2.2e-17 92.4 182 36.3
Hma1.2p1_0270F.1_g108040 Hydrangea macrophylla HOM05D000998 ORTHO05D000806 2.2e-17 92.4 182 35.7
CSS0031162 Camellia sinensis var. sinensis HOM05D000998 ORTHO05D000806 2.8e-17 92.0 182 35.2
Lj1A997T38 Lonicera japonica HOM05D000998 ORTHO05D000806 3.7e-17 91.7 182 34.1
Actinidia32861 Actinidia chinensis HOM05D000998 ORTHO05D000806 8.2e-17 90.5 182 35.2
Gohir.D08G110700 Gossypium hirsutum HOM05D000998 ORTHO05D000806 1.1e-16 90.1 182 35.7
Gorai.004G118600 Gossypium raimondii HOM05D000998 ORTHO05D000806 1.1e-16 90.1 182 35.7
Oeu061645.1 Olea europaea HOM05D000998 ORTHO05D000806 1.1e-16 90.1 182 34.6
PSO782G2499 Papaver somniferum HOM05D000998 ORTHO05D000806 1.1e-16 90.1 182 35.7
Sabra15G0153400 Salix brachista HOM05D000998 ORTHO05D000806 1.4e-16 89.7 178 35.4
Aqoxy7G00362 Aquilegia oxysepala HOM05D000998 ORTHO05D000806 1.8e-16 89.4 182 35.7
Peaxi162Scf01464g00028 Petunia axillaris HOM05D000998 ORTHO05D000806 1.8e-16 89.4 182 34.6
Sc19g0001520 Simmondsia chinensis HOM05D000998 ORTHO05D000806 1.8e-16 89.4 182 34.1
Ciclev10005795m.g Citrus clementina HOM05D000998 ORTHO05D000806 2.4e-16 89.0 182 35.2
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 3.1e-16 88.6 182 35.7
Oeu021787.1 Olea europaea HOM05D000998 ORTHO05D000806 3.1e-16 88.6 182 33.5
Thecc.03G176300 Theobroma cacao HOM05D000998 ORTHO05D000806 4.1e-16 88.2 177 36.2
AUR62015987 Chenopodium quinoa HOM05D000998 ORTHO05D000806 5.3e-16 87.8 182 34.1
AUR62021195 Chenopodium quinoa HOM05D000998 ORTHO05D000806 5.3e-16 87.8 182 34.1
PSO478G3297 Papaver somniferum HOM05D000998 ORTHO05D000806 5.3e-16 87.8 182 34.6
SalBow4G2383 Salvia bowleyana HOM05D000998 ORTHO05D000806 5.3e-16 87.8 182 35.7
CAN.G490.28 Capsicum annuum HOM05D000998 ORTHO05D000806 6.9e-16 87.4 182 34.6
DCAR_018197 Daucus carota HOM05D000998 ORTHO05D000806 6.9e-16 87.4 180 36.1
Thecc.03G176400 Theobroma cacao HOM05D000998 ORTHO05D000806 6.9e-16 87.4 176 36.9
arahy.Tifrunner.gnm1.ann1.MGEP0F Arachis hypogaea HOM05D000998 ORTHO05D000806 9.0e-16 87.0 182 35.2
Manes.06G146900 Manihot esculenta HOM05D000998 ORTHO05D000806 9.0e-16 87.0 182 33.0
Nn1g01460 Nelumbo nucifera HOM05D000998 ORTHO05D000806 9.0e-16 87.0 99 51.5
arahy.Tifrunner.gnm1.ann1.HA0JIQ Arachis hypogaea HOM05D000998 ORTHO05D000806 1.2e-15 86.7 182 34.6
Lalb_Chr03g0034541 Lupinus albus HOM05D000998 ORTHO05D000806 1.2e-15 86.7 182 34.1
Hund04738 Selenicereus undatus HOM05D000998 ORTHO05D000806 1.5e-15 86.3 182 35.7
Cpa.g.sc107.50 Carica papaya HOM05D000998 ORTHO05D000806 2.0e-15 85.9 182 33.0
Prupe.2G294100 Prunus persica HOM05D000998 ORTHO05D000806 2.6e-15 85.5 182 34.1
vmacro06682 Vaccinium macrocarpon HOM05D000998 ORTHO05D000806 3.4e-15 85.1 182 35.7
arahy.Tifrunner.gnm1.ann1.L2LC7G Arachis hypogaea HOM05D000998 ORTHO05D000806 4.5e-15 84.7 182 35.2
PGSC0003DMG400014340 Solanum tuberosum HOM05D000998 ORTHO05D000806 4.5e-15 84.7 182 33.5
arahy.Tifrunner.gnm1.ann1.XGDM8S Arachis hypogaea HOM05D000998 ORTHO05D000806 5.9e-15 84.3 182 35.2
Potri.015G143700 Populus trichocarpa HOM05D000998 ORTHO05D000806 5.9e-15 84.3 182 34.1
Atru.chr1.460 Acer truncatum HOM05D000998 ORTHO05D000806 7.7e-15 84.0 182 32.4
MD07G1268400 Malus domestica HOM05D000998 ORTHO05D000806 7.7e-15 84.0 182 34.1
Psat6g199480 Pisum sativum HOM05D000998 ORTHO05D000806 7.7e-15 84.0 182 35.2
Solyc03g025840.3 Solanum lycopersicum HOM05D000998 ORTHO05D000806 7.7e-15 84.0 182 33.0
CiPaw.03G106100 Carya illinoinensis HOM05D000998 ORTHO05D000806 1.0e-14 83.6 182 34.6
ClCG09G012960 Citrullus lanatus HOM05D000998 ORTHO05D000806 1.0e-14 83.6 182 34.6
Lsat_1_v5_gn_2_131981 Lactuca sativa HOM05D000998 ORTHO05D000806 1.0e-14 83.6 182 33.5
Zm00001eb185950 Zea mays HOM05D000998 ORTHO05D000806 1.3e-14 83.2 183 37.7
Sopen03g004650 Solanum pennellii HOM05D000998 ORTHO05D000806 1.7e-14 82.8 182 32.4
HPP92_005062 Vanilla planifolia HOM05D000998 ORTHO05D000806 1.7e-14 82.8 176 34.7
Zm00001eb248610 Zea mays HOM05D000998 ORTHO05D000806 1.7e-14 82.8 183 36.6
MD01G1200600 Malus domestica HOM05D000998 ORTHO05D000806 2.2e-14 82.4 182 33.5
Ah.07g207230 Amaranthus hybridus HOM05D000998 ORTHO05D000806 2.9e-14 82.0 161 34.8
Oeu022589.1 Olea europaea HOM05D000998 ORTHO05D000806 5.0e-14 81.3 182 33.0
Potri.012G141000 Populus trichocarpa HOM05D000998 ORTHO05D000806 6.5e-14 80.9 182 33.5
SalBow4G2248 Salvia bowleyana HOM05D000998 ORTHO05D000806 6.5e-14 80.9 200 32.5
GSVIVG01028979001 Vitis vinifera HOM05D000998 ORTHO05D000806 6.5e-14 80.9 182 33.0
Migut.F00342 Erythranthe guttata HOM05D000998 ORTHO05D000806 8.5e-14 80.5 182 31.9
Aa31LG7G12280 Aethionema arabicum HOM05D000998 ORTHO05D000806 1.1e-13 80.1 182 35.2
ECA238G4547 Erigeron canadensis HOM05D000998 ORTHO05D000806 1.1e-13 80.1 182 31.3
Os04g0533500 Oryza sativa ssp. japonica HOM05D000998 ORTHO05D000806 1.1e-13 80.1 181 35.4
Cc02_g03010 Coffea canephora HOM05D000998 ORTHO05D000806 1.4e-13 79.7 182 33.0
COL.COLO4_14307 Corchorus olitorius HOM05D000998 ORTHO05D000806 1.4e-13 79.7 182 35.2
MELO3C003324.2 Cucumis melo HOM05D000998 ORTHO05D000806 1.4e-13 79.7 182 33.5
Hund11749 Selenicereus undatus HOM05D000998 ORTHO05D000806 1.4e-13 79.7 182 33.5
Ca_10772_v3 Cicer arietinum L. HOM05D000998 ORTHO05D000806 1.9e-13 79.3 182 33.0
Duzib205G0285 Durio zibethinus HOM05D000998 ORTHO05D000806 2.5e-13 79.0 182 33.0
FAN03G0080 Fragaria x ananassa HOM05D000998 ORTHO05D000806 2.5e-13 79.0 182 33.5
SEGI_05958 Sequoiadendron giganteum HOM05D000998 ORTHO05D000806 2.5e-13 79.0 176 33.5
Lj5g0009646 Lotus japonicus HOM05D000998 ORTHO05D000806 3.2e-13 78.6 182 31.9
CANSAT21G0217 Cannabis sativa HOM05D000998 ORTHO05D000806 4.2e-13 78.2 182 32.4
CANSAT21G1019 Cannabis sativa HOM05D000998 ORTHO05D000806 4.2e-13 78.2 182 32.4
CsaV3_3G049920 Cucumis sativus L. HOM05D000998 ORTHO05D000806 4.2e-13 78.2 182 31.3
Eucgr.A02792 Eucalyptus grandis HOM05D000998 ORTHO05D000806 4.2e-13 78.2 177 33.3
HanXRQChr14g0462441 Helianthus annuus HOM05D000998 ORTHO05D000806 4.2e-13 78.2 182 34.6
FAN03G0780 Fragaria x ananassa HOM05D000998 ORTHO05D000806 7.2e-13 77.4 182 33.0
THA.LOC104811982 Tarenaya hassleriana HOM05D000998 ORTHO05D000806 7.2e-13 77.4 182 33.5
Zm00001eb075580 Zea mays HOM05D000998 ORTHO05D000806 7.2e-13 77.4 181 34.3
ATR0680G073 Amborella trichopoda HOM05D000998 ORTHO05D000806 9.4e-13 77.0 176 33.5
MBI17_g08180_MAGBIO Magnolia biondii HOM05D000998 ORTHO05D000806 9.4e-13 77.0 182 32.4
MBI17_g47088_MAGBIO Magnolia biondii HOM05D000998 ORTHO05D000806 9.4e-13 77.0 182 32.4
TWI14G0301 Tripterygium wilfordii HOM05D000998 ORTHO05D000806 1.2e-12 76.6 182 30.2
Cfa008317 Carpinus fangiana HOM05D000998 ORTHO05D000806 1.6e-12 76.3 182 30.2
CDE11G0628 Ceratophyllum demersum HOM05D000998 ORTHO05D000806 1.6e-12 76.3 182 30.2
BcaC06g32800 Brassica carinata HOM05D000998 ORTHO05D000806 2.1e-12 75.9 182 34.6
Duzib196G0002 Durio zibethinus HOM05D000998 ORTHO05D000806 2.1e-12 75.9 182 33.0
A03p56100 Brassica napus HOM05D000998 ORTHO05D000806 3.6e-12 75.1 182 34.6
C07p54430 Brassica napus HOM05D000998 ORTHO05D000806 3.6e-12 75.1 182 34.6
BolC7t45928H Brassica oleracea HOM05D000998 ORTHO05D000806 3.6e-12 75.1 182 34.6
BraA03t14683Z Brassica rapa HOM05D000998 ORTHO05D000806 3.6e-12 75.1 182 34.6
QL01p010389 Quercus lobata HOM05D000998 ORTHO05D000806 3.6e-12 75.1 182 30.8
FvH4_7g29440 Fragaria vesca HOM05D000998 ORTHO05D000806 4.6e-12 74.7 182 31.9
FAN06G3055 Fragaria x ananassa HOM05D000998 ORTHO05D000806 4.6e-12 74.7 182 31.9
FAN06G4455 Fragaria x ananassa HOM05D000998 ORTHO05D000806 4.6e-12 74.7 182 31.9
Glyma.10G236200 Glycine max HOM05D000998 ORTHO05D000806 4.6e-12 74.7 182 29.7
RcHm_v2.0_Chr1g0377231 Rosa chinensis HOM05D000998 ORTHO05D000806 4.6e-12 74.7 181 33.1
Duzib084G1300 Durio zibethinus HOM05D000998 ORTHO05D000806 6.1e-12 74.3 182 32.4
Gohir.A09G181200 Gossypium hirsutum HOM05D000998 ORTHO05D000806 7.9e-12 73.9 182 31.9
Sed0005966 Sechium edule HOM05D000998 ORTHO05D000806 7.9e-12 73.9 182 31.9
Lalb_Chr06g0161131 Lupinus albus HOM05D000998 ORTHO05D000806 1.0e-11 73.6 182 29.7
PGR042G0129 Punica granatum HOM05D000998 ORTHO05D000806 1.0e-11 73.6 182 30.8
Rhsim03G0180700 Rhododendron simsii HOM05D000998 ORTHO05D000806 1.0e-11 73.6 212 31.1
TPR.G14347 Trifolium pratense HOM05D000998 ORTHO05D000806 1.0e-11 73.6 182 31.9
EL10Ac3g05645 Beta vulgaris HOM05D000998 ORTHO05D000806 1.8e-11 72.8 182 31.9
Carub.0007s1541 Capsella rubella HOM05D000998 ORTHO05D000806 3.0e-11 72.0 182 32.4
Medtr1g100643 Medicago truncatula HOM05D000998 ORTHO05D000806 3.0e-11 72.0 182 31.3
Haze_13716 Corylus avellana HOM05D000998 ORTHO05D000806 3.9e-11 71.6 182 27.5
Phvul.007G069600 Phaseolus vulgaris HOM05D000998 ORTHO05D000806 3.9e-11 71.6 182 30.8
VMungo0720G3041 Vigna mungo HOM05D000998 ORTHO05D000806 5.1e-11 71.2 182 29.7
Glyma.20G158300 Glycine max HOM05D000998 ORTHO05D000806 8.8e-11 70.5 182 29.1
CARHR232990 Cardamine hirsuta HOM05D000998 ORTHO05D000806 1.1e-10 70.1 182 33.0
arahy.Tifrunner.gnm1.ann1.7ZZB5D Arachis hypogaea HOM05D003584 ORTHO05D086657 1.5e-10 69.7 53 66.0
Sp7g23600 Schrenkiella parvula HOM05D000998 ORTHO05D000806 1.5e-10 69.7 182 33.0
Dinv28444 Davidia involucrata HOM05D000998 ORTHO05D000806 2.0e-10 69.3 77 49.4
Thhalv10026122m.g Eutrema salsugineum HOM05D000998 ORTHO05D000806 5.7e-10 67.8 182 32.4
QL09p014238 Quercus lobata HOM05D000998 ORTHO05D000806 5.7e-10 67.8 182 28.0
QL93p1873_0068 Quercus lobata HOM05D000998 ORTHO05D000806 5.7e-10 67.8 182 28.0
SHI39776 Sapria himalayana HOM05D000998 ORTHO05D000806 9.7e-10 67.0 77 49.4
Sp6g14530 Schrenkiella parvula HOM05D000998 ORTHO05D000806 9.7e-10 67.0 182 30.8
arahy.Tifrunner.gnm1.ann1.DB9QTB Arachis hypogaea HOM05D000998 ORTHO05D000806 1.3e-09 66.6 48 70.8
C02p19940 Brassica napus HOM05D000998 ORTHO05D000806 1.3e-09 66.6 182 29.1
BolC2t08129H Brassica oleracea HOM05D000998 ORTHO05D000806 1.3e-09 66.6 182 29.1
unitig_37.g12523 Utricularia gibba HOM05D000998 ORTHO05D000806 1.3e-09 66.6 182 31.9
Zm00001eb198680 Zea mays HOM05D000998 ORTHO05D000806 1.7e-09 66.2 172 32.0
BraA02t06258Z Brassica rapa HOM05D000998 ORTHO05D000806 2.2e-09 65.9 182 29.7
CDE06G2025 Ceratophyllum demersum HOM05D000998 ORTHO05D000806 2.8e-09 65.5 146 28.8
arahy.Tifrunner.gnm1.ann1.3C34JQ Arachis hypogaea HOM05D000998 ORTHO05D000806 4.8e-09 64.7 48 66.7
CDE09G0178 Ceratophyllum demersum HOM05D000998 ORTHO05D000806 4.8e-09 64.7 91 41.8
Thhalv10014551m.g Eutrema salsugineum HOM05D000998 ORTHO05D000806 4.8e-09 64.7 182 28.6
SMO340G0028 Selaginella moellendorffii HOM05D000998 ORTHO05D000806 4.8e-09 64.7 174 28.2
A02p11940 Brassica napus HOM05D000998 ORTHO05D000806 8.2e-09 63.9 182 29.1
Phvul.004G116800 Phaseolus vulgaris HOM05D000998 ORTHO05D000806 1.1e-08 63.5 70 50.0
VMungo0464G1892 Vigna mungo HOM05D000998 ORTHO05D000806 1.1e-08 63.5 71 46.5
COL.COLO4_16200 Corchorus olitorius HOM05D000998 ORTHO05D000806 1.4e-08 63.2 138 33.3
AT4G25570 Arabidopsis thaliana HOM05D000998 ORTHO05D000806 1.8e-08 62.8 161 31.7
Sabra04G0077600 Salix brachista HOM05D000998 ORTHO05D000806 1.8e-08 62.8 147 34.7
AL7G27530 Arabidopsis lyrata HOM05D000998 ORTHO05D000806 3.1e-08 62.0 77 49.4
CARHR265250 Cardamine hirsuta HOM05D000998 ORTHO05D000806 3.1e-08 62.0 182 27.5
BcaC03g14547 Brassica carinata HOM05D000998 ORTHO05D000806 4.1e-08 61.6 183 27.3
CSS0004335 Camellia sinensis var. sinensis HOM05D000998 ORTHO05D000806 4.1e-08 61.6 57 57.9
Carub.0008s1237 Capsella rubella HOM05D000998 ORTHO05D000806 4.1e-08 61.6 182 29.1
AagrBONN_evm.TU.Sc2ySwM_344.1625 Anthoceros agrestis HOM05D000998 ORTHO05D000806 5.3e-08 61.2 178 28.7
BcaB05g21900 Brassica carinata HOM05D000998 ORTHO05D000806 6.9e-08 60.8 182 28.0
BcaB05g21944 Brassica carinata HOM05D000998 ORTHO05D000806 6.9e-08 60.8 182 28.0
SGA_v2.0_scaffold44G16721 Striga asiatica HOM05D000998 ORTHO05D000806 6.9e-08 60.8 77 44.2
ATR0684G182 Amborella trichopoda HOM05D000998 ORTHO05D000806 2.0e-07 59.3 54 61.1
CSS0049198 Camellia sinensis var. sinensis HOM05D000998 ORTHO05D000806 5.9e-07 57.8 35 71.4
CAN.G282.110 Capsicum annuum HOM05D000998 ORTHO05D000806 1.0e-06 57.0 92 43.5
Aqoxy3G04106 Aquilegia oxysepala HOM05D000998 ORTHO05D000806 1.3e-06 56.6 73 45.2
Nitab4.5_0000538g0140 Nicotiana tabacum HOM05D000998 ORTHO05D000806 1.3e-06 56.6 96 39.6
HPP92_021840 Vanilla planifolia HOM05D000998 ORTHO05D000806 1.3e-06 56.6 182 25.8
Os08g0101700 Oryza sativa ssp. japonica HOM05D000998 ORTHO05D000806 1.7e-06 56.2 37 70.3
Sabra12G0105800 Salix brachista HOM05D000998 ORTHO05D000806 1.7e-06 56.2 38 63.2
FAN01G1083 Fragaria x ananassa HOM05D000998 ORTHO05D000806 2.2e-06 55.8 35 68.6
FAN10G2288 Fragaria x ananassa HOM05D000998 ORTHO05D000806 2.2e-06 55.8 35 68.6
Medtr1g033360 Medicago truncatula HOM05D000998 ORTHO05D000806 2.2e-06 55.8 113 34.5
Actinidia36306 Actinidia chinensis HOM05D000998 ORTHO05D000806 2.9e-06 55.5 182 26.9
SGA_v2.0_scaffold799G53616 Striga asiatica HOM05D000998 ORTHO05D000806 2.9e-06 55.5 35 65.7
Dinv34856 Davidia involucrata HOM05D000998 ORTHO05D000806 3.8e-06 55.1 182 25.3
FAN02G0244 Fragaria x ananassa HOM05D000998 ORTHO05D000806 3.8e-06 55.1 174 27.6
RcHm_v2.0_Chr1g0377221 Rosa chinensis HOM05D000998 ORTHO05D000806 3.8e-06 55.1 73 42.5
MSTRG.12229 Avicennia marina HOM05D000998 ORTHO05D000806 5.0e-06 54.7 97 41.2
Cc07_g05050 Coffea canephora HOM05D000998 ORTHO05D000806 5.0e-06 54.7 182 26.4
Phvul.004G072300 Phaseolus vulgaris HOM05D000998 ORTHO05D000806 5.0e-06 54.7 174 25.3
CsaV3_5G015390 Cucumis sativus L. HOM05D000998 ORTHO05D000806 6.5e-06 54.3 175 24.6
FvH4_6g45440 Fragaria vesca HOM05D000998 ORTHO05D000806 6.5e-06 54.3 174 27.6
FAN09G2744 Fragaria x ananassa HOM05D000998 ORTHO05D000806 6.5e-06 54.3 174 27.0
FAN14G3581 Fragaria x ananassa HOM05D000998 ORTHO05D000806 6.5e-06 54.3 174 27.6
Nitab4.5_0002521g0040 Nicotiana tabacum HOM05D000998 ORTHO05D000806 6.5e-06 54.3 100 38.0
Os10g0504200 Oryza sativa ssp. japonica HOM05D000998 ORTHO05D000806 6.5e-06 54.3 38 73.7
Lalb_Chr06g0174701 Lupinus albus HOM05D000998 ORTHO05D000806 8.5e-06 53.9 174 23.6
Sed0007218 Sechium edule HOM05D000998 ORTHO05D000806 8.5e-06 53.9 92 37.0
Zm00001eb044100 Zea mays HOM05D000998 ORTHO05D000806 8.5e-06 53.9 38 68.4


User provided reference genes

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