Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 8.4e-279 963.0 468 100.0
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 8.1e-173 610.9 465 66.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 4.8e-157 558.5 465 60.6
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 8.1e-157 557.8 479 60.3
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.4e-156 557.0 488 61.1
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 2.4e-156 556.2 462 61.9
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.0e-151 540.8 469 58.2
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 2.3e-151 539.7 493 59.0
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.1e-149 533.1 469 58.4
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 6.2e-149 531.6 474 57.8
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 2.0e-147 526.6 471 57.7
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 4.5e-147 525.4 467 59.3
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.2e-146 523.1 473 56.7
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.9e-146 522.7 473 56.4
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.9e-146 521.9 473 56.4
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 2.5e-145 519.6 466 59.7
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 9.3e-145 517.7 474 57.4
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 6.1e-144 515.0 467 57.2
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.0e-143 514.2 467 57.0
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.3e-143 513.8 473 57.3
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 5.1e-143 511.9 473 56.7
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 5.1e-143 511.9 473 56.7
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 4.3e-142 508.8 473 56.0
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 5.7e-142 508.4 472 56.4
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 5.7e-142 508.4 469 55.7
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.8e-140 503.4 472 55.1
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 5.3e-140 501.9 467 54.6
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 9.0e-140 501.1 478 54.8
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.0e-139 500.0 464 56.2
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 4.5e-139 498.8 469 56.3
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 6.5e-138 495.0 483 56.5
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.9e-137 493.4 479 53.4
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.2e-133 479.9 469 54.6
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 6.3e-133 478.4 469 54.4
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 6.3e-133 478.4 470 54.5
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 8.2e-133 478.0 480 52.3
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 2.4e-132 476.5 475 53.3
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 5.3e-132 475.3 470 54.5
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 9.1e-132 474.6 435 56.6
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 2.6e-131 473.0 443 55.1
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 2.5e-129 466.5 478 53.1
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.2e-129 466.1 470 53.2
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 4.2e-129 465.7 410 57.8
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.2e-128 464.2 461 52.5
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 1.0e-127 461.1 467 53.3
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.4e-127 460.7 466 53.4
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.4e-127 460.7 466 53.4
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 3.7e-125 452.6 464 49.4
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 3.7e-125 452.6 385 59.2
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.4e-124 450.7 464 54.7
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 4.1e-124 449.1 462 50.9
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.5e-123 447.2 416 57.0
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 1.0e-122 444.5 465 50.8
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.3e-122 444.1 463 51.0
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.9e-122 443.0 468 49.4
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 5.0e-122 442.2 462 51.1
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 5.0e-122 442.2 465 52.3
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 8.5e-122 441.4 466 51.5
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 1.9e-121 440.3 468 48.7
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 4.2e-121 439.1 468 52.4
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.0e-119 434.5 464 50.2
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 6.7e-119 431.8 466 50.0
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 7.4e-118 428.3 473 52.0
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.7e-117 427.2 467 47.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 3.7e-117 426.0 472 50.2
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 6.3e-117 425.2 472 50.2
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.1e-116 424.5 404 54.7
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 1.4e-116 424.1 466 49.8
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 2.4e-116 423.3 470 50.6
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 9.1e-116 421.4 477 49.5
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.6e-115 420.6 478 49.2
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.6e-115 420.6 470 49.8
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 5.9e-115 418.7 505 46.9
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.3e-114 417.5 485 46.6
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.9e-114 416.4 464 49.6
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.5e-113 414.1 464 49.1
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 6.1e-112 408.7 379 55.1
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 4.0e-111 406.0 465 48.4
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 4.0e-111 406.0 396 54.8
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 9.8e-110 401.4 379 53.0
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 9.8e-110 401.4 404 52.5
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.8e-108 397.1 397 54.9
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.0e-106 391.3 473 46.1
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.3e-106 391.0 473 45.7
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.8e-103 380.6 471 44.8
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 6.8e-103 378.6 312 61.5
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.4e-102 375.9 405 51.1
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 1.6e-99 367.5 337 59.9
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.1e-97 361.3 330 56.1
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 2.1e-96 357.1 429 48.5
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.0e-95 354.8 476 42.6
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.4e-95 354.4 477 43.0
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 3.0e-95 353.2 473 41.2
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 8.9e-95 351.7 474 42.4
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 2.6e-94 350.1 379 49.3
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.3e-93 347.8 473 45.9
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 4.1e-92 342.8 475 43.2
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 9.2e-92 341.7 476 43.1
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.7e-91 340.1 477 43.0
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 5.9e-91 339.0 477 43.0
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 2.9e-90 336.7 474 41.1
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-86 324.3 557 37.0
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 2.6e-86 323.6 380 47.6
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 6.4e-85 318.9 561 36.4
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.0e-82 310.1 468 40.4
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.3e-81 305.4 445 40.7
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 2.1e-80 303.9 369 48.8
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 2.1e-75 287.3 483 38.5
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 6.2e-72 275.8 369 46.3
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.8e-71 274.2 405 38.5
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 1.5e-70 271.2 369 43.6
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.6e-70 270.4 422 38.2
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.9e-66 256.5 496 33.3
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.1e-60 238.4 548 31.6
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 4.6e-59 233.0 366 40.2
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 3.1e-55 220.3 141 70.9
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 7.1e-52 209.1 231 49.4
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 2.7e-51 207.2 255 45.5
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 4.3e-49 199.9 515 29.9
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 9.0e-47 192.2 407 36.1
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-45 187.6 462 30.5
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 9.3e-44 182.2 279 40.1
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.5e-41 174.1 144 55.6
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.2e-40 169.5 160 51.2
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 8.1e-40 169.1 153 51.6
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.2e-30 138.7 151 51.7
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 5.0e-29 133.3 98 62.2
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.1e-25 122.1 160 39.4
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.6e-24 118.2 102 58.8
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.1e-23 115.5 228 33.8
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 6.9e-15 86.3 58 67.2
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 8.8e-10 69.3 75 46.7
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 7.4e-09 66.2 62 51.6
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 1.3e-08 65.5 127 32.3
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 4.8e-08 63.5 52 51.9


User provided reference genes

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