Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0208 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.5e-25 119.8 120 100.0
TAR375G0700 Trochodendron aralioides HOM05D000480 ORTHO05D000313 5.7e-14 81.3 45 82.2
TAR375G1115 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.3e-13 80.1 45 80.0
Lj7A549T55 Lonicera japonica HOM05D000480 ORTHO05D000313 2.4e-12 75.9 118 79.7
MD12G1231200 Malus domestica HOM05D000480 ORTHO05D000313 2.0e-11 72.8 118 76.3
Lj7A549T53 Lonicera japonica HOM05D000448 ORTHO05D000313 5.9e-11 71.2 45 68.9
MD12G1230800 Malus domestica HOM05D000480 ORTHO05D000313 5.9e-11 71.2 118 75.4
MD12G1230900 Malus domestica HOM05D000480 ORTHO05D000313 5.9e-11 71.2 118 75.4
Cc02_g25340 Coffea canephora HOM05D000480 ORTHO05D000313 2.3e-10 69.3 118 76.3
Lj7C549T9 Lonicera japonica HOM05D000480 ORTHO05D000313 3.8e-10 68.6 45 64.4
Lj7A549T57 Lonicera japonica HOM05D000448 ORTHO05D000313 5.0e-10 68.2 45 62.2
MD12G1231100 Malus domestica HOM05D000480 ORTHO05D000313 8.6e-10 67.4 118 73.7
Prupe.2G270400 Prunus persica HOM05D000480 ORTHO05D000313 1.5e-09 66.6 118 75.4
PGR004G0706 Punica granatum HOM05D000480 ORTHO05D000313 2.5e-09 65.9 118 73.7
Dinv44042 Davidia involucrata HOM05D000480 ORTHO05D000313 3.3e-09 65.5 118 76.3
Nn8g40300 Nelumbo nucifera HOM05D000480 ORTHO05D000313 3.3e-09 65.5 117 76.1
CANSAT56G2348 Cannabis sativa HOM05D000480 ORTHO05D000313 4.2e-09 65.1 45 57.8
FAN03G2567 Fragaria x ananassa HOM05D000480 ORTHO05D000313 7.2e-09 64.3 45 57.8
CANSAT56G0672 Cannabis sativa HOM05D000480 ORTHO05D000313 1.2e-08 63.5 45 57.8
Cc02_g25360 Coffea canephora HOM05D000480 ORTHO05D000313 1.2e-08 63.5 118 75.4
QL09p027393 Quercus lobata HOM05D000480 ORTHO05D000313 1.2e-08 63.5 45 60.0
Ciclev10033865m.g Citrus clementina HOM05D000448 ORTHO05D000313 1.6e-08 63.2 45 60.0
Prupe.2G270500 Prunus persica HOM05D000448 ORTHO05D000313 1.6e-08 63.2 118 71.2
FvH4_7g26700 Fragaria vesca HOM05D000448 ORTHO05D000313 2.1e-08 62.8 45 60.0
FAN03G2598 Fragaria x ananassa HOM05D000480 ORTHO05D000313 2.1e-08 62.8 45 60.0
FAN06G3867 Fragaria x ananassa HOM05D000480 ORTHO05D000313 2.1e-08 62.8 44 59.1
Nitab4.5_0000563g0170 Nicotiana tabacum HOM05D000480 ORTHO05D000313 2.1e-08 62.8 45 60.0
PSO782G5375 Papaver somniferum HOM05D000480 ORTHO05D000313 2.1e-08 62.8 45 60.0
FAN10G1807 Fragaria x ananassa HOM05D000480 ORTHO05D000313 3.6e-08 62.0 45 55.6
Oeu019259.1 Olea europaea HOM05D000480 ORTHO05D000313 3.6e-08 62.0 118 72.9
CAN.G1585.3 Capsicum annuum HOM05D000480 ORTHO05D000313 4.7e-08 61.6 44 56.8
CAN.G2133.1 Capsicum annuum HOM05D000480 ORTHO05D000313 4.7e-08 61.6 44 56.8
CAN.G756.49 Capsicum annuum HOM05D000480 ORTHO05D000313 4.7e-08 61.6 44 56.8
Cfa013603 Carpinus fangiana HOM05D000480 ORTHO05D000313 6.1e-08 61.2 118 72.9
Hma1.2p1_2969F.1_g331030 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 6.1e-08 61.2 45 51.1
CAN.G756.43 Capsicum annuum HOM05D000480 ORTHO05D000313 8.0e-08 60.8 45 53.3
ECA248G3422 Erigeron canadensis HOM05D000480 ORTHO05D000313 8.0e-08 60.8 45 57.8
FvH4_7g26643 Fragaria vesca HOM05D000480 ORTHO05D000313 1.0e-07 60.5 118 72.9
FAN06G3463 Fragaria x ananassa HOM05D000480 ORTHO05D000313 1.0e-07 60.5 118 72.9
Lsat_1_v5_gn_1_84340 Lactuca sativa HOM05D000448 ORTHO05D000313 1.0e-07 60.5 45 55.6
TAR374G0173 Trochodendron aralioides HOM05D000448 ORTHO05D000313 1.0e-07 60.5 36 69.4
FAN01G0752 Fragaria x ananassa HOM05D000480 ORTHO05D000313 1.4e-07 60.1 45 55.6
Peaxi162Scf00853g00424 Petunia axillaris HOM05D000480 ORTHO05D000313 1.4e-07 60.1 45 55.6
Thecc.03G145400 Theobroma cacao HOM05D000480 ORTHO05D000313 1.4e-07 60.1 45 53.3
TWI14G0350 Tripterygium wilfordii HOM05D000448 ORTHO05D000313 1.4e-07 60.1 45 53.3
Atru.chr6.1977 Acer truncatum HOM05D000448 ORTHO05D000313 1.8e-07 59.7 44 56.8
Lsat_1_v5_gn_1_84300 Lactuca sativa HOM05D000480 ORTHO05D000313 1.8e-07 59.7 45 55.6
PGSC0003DMG400001697 Solanum tuberosum HOM05D000480 ORTHO05D000313 1.8e-07 59.7 45 55.6
BraA05t19464Z Brassica rapa HOM05D000480 ORTHO05D000313 2.3e-07 59.3 45 51.1
FAN10G1476 Fragaria x ananassa HOM05D000480 ORTHO05D000313 2.3e-07 59.3 118 72.9
MD01G1175400 Malus domestica HOM05D000480 ORTHO05D000313 2.3e-07 59.3 45 53.3
BcaB02g08854 Brassica carinata HOM05D000480 ORTHO05D000313 3.0e-07 58.9 45 51.1
Thecc.10G052600 Theobroma cacao HOM05D000480 ORTHO05D000313 3.0e-07 58.9 108 71.3
BcaC02g12275 Brassica carinata HOM05D000480 ORTHO05D000313 4.0e-07 58.5 45 51.1
A05p04900 Brassica napus HOM05D000480 ORTHO05D000313 4.0e-07 58.5 45 51.1
C04p05720 Brassica napus HOM05D000480 ORTHO05D000313 4.0e-07 58.5 45 51.1
BolC4t22202H Brassica oleracea HOM05D000480 ORTHO05D000313 4.0e-07 58.5 45 51.1
CAN.G1585.2 Capsicum annuum HOM05D000480 ORTHO05D000313 4.0e-07 58.5 46 54.3
CAN.G2133.2 Capsicum annuum HOM05D000480 ORTHO05D000313 4.0e-07 58.5 46 54.3
CAN.G756.50 Capsicum annuum HOM05D000480 ORTHO05D000313 4.0e-07 58.5 46 54.3
CAN.G756.52 Capsicum annuum HOM05D000480 ORTHO05D000313 4.0e-07 58.5 46 54.3
CAN.G756.55 Capsicum annuum HOM05D000480 ORTHO05D000313 4.0e-07 58.5 46 54.3
Ciclev10024369m.g Citrus clementina HOM05D000480 ORTHO05D000313 4.0e-07 58.5 45 51.1
ECA248G1667 Erigeron canadensis HOM05D000480 ORTHO05D000313 4.0e-07 58.5 45 53.3
Lj7P549T22 Lonicera japonica HOM05D000480 ORTHO05D000313 5.2e-07 58.2 41 61.0
Ciclev10031687m.g Citrus clementina HOM05D000480 ORTHO05D000313 6.8e-07 57.8 45 53.3
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 6.8e-07 57.8 44 52.3
Hma1.2p1_0632F.1_g192440 Hydrangea macrophylla HOM05D000448 ORTHO05D000313 6.8e-07 57.8 46 54.3
RcHm_v2.0_Chr1g0373281 Rosa chinensis HOM05D000480 ORTHO05D000313 6.8e-07 57.8 118 70.3
VMungo0174G0001 Vigna mungo HOM05D000480 ORTHO05D000313 6.8e-07 57.8 44 56.8
Ciclev10033891m.g Citrus clementina HOM05D000480 ORTHO05D000313 8.9e-07 57.4 45 51.1
ECA248G2383 Erigeron canadensis HOM05D000480 ORTHO05D000313 1.2e-06 57.0 45 46.7
Sp4g26800 Schrenkiella parvula HOM05D000480 ORTHO05D000313 1.2e-06 57.0 45 48.9
PGSC0003DMG400031157 Solanum tuberosum HOM05D000480 ORTHO05D000313 1.2e-06 57.0 46 54.3
PGSC0003DMG400031164 Solanum tuberosum HOM05D000480 ORTHO05D000313 1.2e-06 57.0 45 53.3
MSTRG.4939 Avicennia marina HOM05D000480 ORTHO05D000313 1.5e-06 56.6 45 53.3
Cpa.g.sc13.223 Carica papaya HOM05D000480 ORTHO05D000313 1.5e-06 56.6 33 69.7
Duzib084G0671 Durio zibethinus HOM05D000480 ORTHO05D000313 1.5e-06 56.6 45 53.3
Migut.N01728 Erythranthe guttata HOM05D000480 ORTHO05D000313 1.5e-06 56.6 45 51.1
MD07G1241300 Malus domestica HOM05D000480 ORTHO05D000313 1.5e-06 56.6 45 48.9
Thecc.10G054100 Theobroma cacao HOM05D000480 ORTHO05D000313 1.5e-06 56.6 108 31.5
MSTRG.13297 Avicennia marina HOM05D000480 ORTHO05D000313 2.0e-06 56.2 45 53.3
CAN.G756.41 Capsicum annuum HOM05D000480 ORTHO05D000313 2.0e-06 56.2 114 71.9
CAN.G756.48 Capsicum annuum HOM05D000480 ORTHO05D000313 2.0e-06 56.2 46 52.2
Nitab4.5_0007060g0010 Nicotiana tabacum HOM05D000480 ORTHO05D000313 2.0e-06 56.2 44 52.3
Thecc.10G053800 Theobroma cacao HOM05D000480 ORTHO05D000313 2.0e-06 56.2 108 64.8
HanXRQChr01g0017701 Helianthus annuus HOM05D000480 ORTHO05D000313 2.6e-06 55.8 44 52.3
HanXRQChr11g0347131 Helianthus annuus HOM05D000480 ORTHO05D000313 2.6e-06 55.8 45 48.9
Oeu037434.1 Olea europaea HOM05D000480 ORTHO05D000313 2.6e-06 55.8 45 48.9
PGSC0003DMG400001698 Solanum tuberosum HOM05D000480 ORTHO05D000313 2.6e-06 55.8 46 54.3
PGSC0003DMG400031162 Solanum tuberosum HOM05D000480 ORTHO05D000313 2.6e-06 55.8 46 54.3
Thecc.10G054000 Theobroma cacao HOM05D000480 ORTHO05D000313 2.6e-06 55.8 35 65.7
CARHR139950 Cardamine hirsuta HOM05D000480 ORTHO05D000313 3.4e-06 55.5 45 46.7
Solyc01g088830.2 Solanum lycopersicum HOM05D000480 ORTHO05D000313 3.4e-06 55.5 46 54.3
Sopen01g035670 Solanum pennellii HOM05D000480 ORTHO05D000313 3.4e-06 55.5 46 54.3
Thecc.10G053100 Theobroma cacao HOM05D000480 ORTHO05D000313 3.4e-06 55.5 108 77.8
Oeu037431.2 Olea europaea HOM05D000480 ORTHO05D000313 4.4e-06 55.1 45 46.7
Migut.N01729 Erythranthe guttata HOM05D000480 ORTHO05D000313 5.7e-06 54.7 45 48.9
Eucgr.D01209 Eucalyptus grandis HOM05D000480 ORTHO05D000313 5.7e-06 54.7 118 68.6
Sopen01g035650 Solanum pennellii HOM05D000448 ORTHO05D000313 5.7e-06 54.7 41 53.7
PGSC0003DMG400001695 Solanum tuberosum HOM05D012202 ORTHO05D013097 5.7e-06 54.7 41 53.7
Thecc.01G132000 Theobroma cacao HOM05D000480 ORTHO05D000313 5.7e-06 54.7 35 65.7
Thecc.01G132200 Theobroma cacao HOM05D000480 ORTHO05D000313 7.5e-06 54.3 35 65.7
Thecc.01G132500 Theobroma cacao HOM05D000480 ORTHO05D000313 7.5e-06 54.3 35 65.7
ECA248G1170 Erigeron canadensis HOM05D000480 ORTHO05D000313 9.8e-06 53.9 45 48.9
Thhalv10001761m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 9.8e-06 53.9 45 46.7


User provided reference genes

Program Settings