Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.2e-45 185.3 95 100.0
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.7e-42 173.7 90 98.9
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 4.1e-31 137.9 95 81.1
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.5e-28 128.6 94 73.4
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 6.1e-27 124.0 94 73.4
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.7e-24 115.9 94 68.1
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 4.8e-24 114.4 93 71.0
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 4.8e-24 114.4 97 68.0
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 4.8e-24 114.4 90 68.9
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 6.3e-24 114.0 94 67.0
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.1e-23 113.2 92 66.3
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.8e-23 112.5 94 66.0
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.6e-22 109.4 93 65.6
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.7e-22 108.6 94 62.8
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 2.7e-22 108.6 88 67.0
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 2.9e-21 105.1 95 64.2
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 3.8e-21 104.8 94 61.7
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 5.0e-21 104.4 88 65.9
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.9e-20 102.4 96 63.5
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.5e-20 102.1 96 61.5
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.2e-20 101.7 91 67.0
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 1.6e-19 99.4 92 60.9
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.7e-19 98.6 95 64.2
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 3.6e-19 98.2 96 61.5
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.4e-18 96.3 93 59.1
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.8e-18 95.9 86 62.8
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 5.2e-18 94.4 95 58.9
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 8.8e-18 93.6 95 58.9
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 8.8e-18 93.6 95 58.9
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 8.8e-18 93.6 91 60.4
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.2e-17 93.2 92 59.8
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.5e-17 90.5 98 55.1
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-16 89.7 92 58.7
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 2.2e-16 89.0 99 56.6
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 8.3e-16 87.0 93 57.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.4e-15 86.3 93 55.9
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.8e-15 85.9 92 55.4
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 2.4e-15 85.5 93 55.9
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.4e-15 84.3 96 58.3
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 7.0e-15 84.0 95 55.8
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.9e-14 80.9 97 57.7
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 5.9e-14 80.9 88 60.2
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.0e-13 80.1 95 56.8
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-13 79.7 98 53.1
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 3.8e-13 78.2 79 54.4
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 5.0e-13 77.8 94 56.4
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 5.0e-13 77.8 95 55.8
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 5.0e-13 77.8 90 55.6
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 8.6e-13 77.0 80 57.5
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.1e-12 76.6 88 52.3
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.1e-12 76.6 88 53.4
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.5e-12 76.3 86 52.3
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.5e-12 76.3 87 52.9
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.5e-12 76.3 90 57.8
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.5e-12 76.3 120 44.2
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.9e-12 75.9 97 47.4
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 2.5e-12 75.5 84 52.4
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 3.2e-12 75.1 64 57.8
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 3.2e-12 75.1 64 57.8
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 3.2e-12 75.1 85 51.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 3.2e-12 75.1 70 55.7
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 4.2e-12 74.7 78 52.6
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 4.2e-12 74.7 78 57.7
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 4.2e-12 74.7 99 51.5
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 7.2e-12 73.9 74 56.8
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 9.5e-12 73.6 103 47.6
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.2e-11 73.2 92 50.0
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.6e-11 72.8 95 51.6
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 3.6e-11 71.6 73 53.4
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 3.6e-11 71.6 89 55.1
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 3.6e-11 71.6 94 53.2
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 2.3e-10 68.9 87 50.6
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 2.3e-10 68.9 93 49.5
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.3e-10 68.9 95 48.4
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 3.0e-10 68.6 73 53.4
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 3.0e-10 68.6 73 53.4
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 5.2e-10 67.8 61 60.7
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 6.8e-10 67.4 72 54.2
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 8.8e-10 67.0 94 50.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.2e-09 66.6 72 54.2
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.2e-09 66.6 72 54.2
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.2e-09 66.6 123 41.5
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.5e-09 66.2 64 57.8
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.5e-09 66.2 64 57.8
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.6e-09 65.5 126 36.5
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 9.8e-09 63.5 77 51.9
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 3.7e-08 61.6 60 56.7
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 4.9e-08 61.2 90 47.8
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 4.9e-08 61.2 85 49.4
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 1.8e-07 59.3 51 58.8
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.4e-07 58.9 100 45.0
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 7.0e-07 57.4 58 50.0
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.7e-06 55.5 91 42.9
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 3.5e-06 55.1 90 47.8
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.5e-06 55.1 71 53.5
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 5.9e-06 54.3 110 39.1
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 7.8e-06 53.9 93 46.2


User provided reference genes

Program Settings