Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 4.6e-58 227.6 111 100.0
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.2e-37 159.8 112 69.6
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 3.8e-36 154.8 112 68.8
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 9.9e-29 130.2 106 61.3
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 3.8e-28 128.3 110 57.3
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 1.1e-27 126.7 104 59.6
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 1.4e-27 126.3 106 57.5
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 2.4e-27 125.6 113 58.4
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 4.2e-27 124.8 107 58.9
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 5.5e-27 124.4 104 55.8
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 1.6e-26 122.9 108 53.7
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 4.6e-26 121.3 102 53.9
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 4.6e-26 121.3 102 53.9
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 3.9e-25 118.2 107 57.9
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.7e-25 117.5 108 51.9
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 8.7e-25 117.1 108 51.9
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.9e-24 115.9 108 51.9
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 1.9e-24 115.9 107 49.5
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 3.3e-24 115.2 107 48.6
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.1e-22 110.2 109 49.5
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.4e-22 109.8 103 46.6
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 2.4e-22 109.0 109 48.6
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.1e-22 108.6 106 49.1
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.3e-22 107.8 103 45.6
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 6.9e-22 107.5 107 52.3
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 9.0e-22 107.1 108 47.2
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 9.0e-22 107.1 109 47.7
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 1.5e-21 106.3 115 40.9
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 2.6e-21 105.5 108 49.1
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 2.6e-21 105.5 114 49.1
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.4e-21 105.1 107 50.5
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 4.5e-21 104.8 114 44.7
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 5.8e-21 104.4 103 46.6
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 7.6e-21 104.0 108 45.4
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 7.6e-21 104.0 106 50.9
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 7.6e-21 104.0 102 47.1
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.0e-20 103.6 105 47.6
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 3.8e-20 101.7 104 43.3
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 4.9e-20 101.3 114 45.6
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 4.9e-20 101.3 114 45.6
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 8.4e-20 100.5 111 45.9
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 1.9e-19 99.4 104 45.2
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 2.5e-19 99.0 103 47.6
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.2e-19 98.2 114 44.7
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.2e-19 98.2 110 44.5
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 4.2e-19 98.2 112 46.4
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 5.5e-19 97.8 109 45.9
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 5.5e-19 97.8 109 45.9
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 7.1e-19 97.4 103 49.5
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 7.1e-19 97.4 107 44.9
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 9.3e-19 97.1 113 47.8
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 1.2e-18 96.7 109 45.9
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 1.2e-18 96.7 109 45.9
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 1.2e-18 96.7 108 43.5
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 1.2e-18 96.7 103 48.5
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.2e-18 96.7 110 43.6
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.6e-18 96.3 114 43.9
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 2.1e-18 95.9 109 46.8
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 2.1e-18 95.9 109 46.8
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 2.7e-18 95.5 109 45.9
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 2.7e-18 95.5 109 45.9
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.7e-18 95.5 110 43.6
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.7e-18 95.5 102 42.2
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 3.5e-18 95.1 109 42.2
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 4.6e-18 94.7 107 43.9
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 4.6e-18 94.7 106 42.5
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 6.0e-18 94.4 117 44.4
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 6.0e-18 94.4 108 43.5
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 1.0e-17 93.6 104 43.3
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.0e-17 93.6 114 43.9
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 3.0e-17 92.0 107 43.0
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 3.0e-17 92.0 101 41.6
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 3.0e-17 92.0 102 43.1
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 5.1e-17 91.3 113 44.2
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 5.1e-17 91.3 111 41.4
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 6.7e-17 90.9 113 45.1
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 6.7e-17 90.9 116 38.8
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 6.7e-17 90.9 116 38.8
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 8.7e-17 90.5 116 38.8
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 8.7e-17 90.5 110 40.9
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.5e-16 89.7 113 40.7
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.9e-16 89.4 101 38.6
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 3.3e-16 88.6 91 45.1
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.3e-16 88.2 113 42.5
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.3e-16 88.2 113 38.9
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 5.7e-16 87.8 105 43.8
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 7.4e-16 87.4 107 41.1
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 7.4e-16 87.4 107 41.1
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 9.7e-16 87.0 100 40.0
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 1.3e-15 86.7 101 36.6
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 1.6e-15 86.3 101 38.6
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 2.2e-15 85.9 113 41.6
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 2.8e-15 85.5 101 36.6
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 1.1e-14 83.6 113 41.6
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 1.4e-14 83.2 106 38.7
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 1.4e-14 83.2 108 37.0
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 1.8e-14 82.8 105 41.9
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 3.1e-14 82.0 112 39.3
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 3.1e-14 82.0 100 42.0
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 3.1e-14 82.0 106 34.0
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 4.1e-14 81.6 110 41.8
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 4.1e-14 81.6 108 35.2
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 4.1e-14 81.6 110 38.2
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 5.3e-14 81.3 107 38.3
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 5.3e-14 81.3 105 41.0
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 6.9e-14 80.9 107 38.3
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 9.0e-14 80.5 102 41.2
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 9.0e-14 80.5 102 41.2
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 1.2e-13 80.1 106 34.0
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 2.0e-13 79.3 106 34.0
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 2.0e-13 79.3 101 40.6
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 2.0e-13 79.3 101 40.6
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 2.0e-13 79.3 101 34.7
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 2.6e-13 79.0 101 42.6
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 2.6e-13 79.0 101 40.6
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 2.6e-13 79.0 101 42.6
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 3.4e-13 78.6 101 42.6
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 3.4e-13 78.6 105 37.1
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 4.5e-13 78.2 109 38.5
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 4.5e-13 78.2 106 39.6
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 1.0e-12 77.0 105 38.1
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 1.0e-12 77.0 101 41.6
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 1.0e-12 77.0 101 41.6
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 1.3e-12 76.6 101 36.6
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.2e-12 75.9 102 38.2
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 2.9e-12 75.5 101 39.6
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 2.9e-12 75.5 103 39.8
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 5.0e-12 74.7 102 33.3
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 5.0e-12 74.7 102 37.3
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 6.5e-12 74.3 101 39.6
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 1.9e-11 72.8 101 38.6
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.5e-11 72.4 102 39.2
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 2.5e-11 72.4 105 40.0
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 3.2e-11 72.0 102 38.2
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 4.2e-11 71.6 101 40.6
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 5.5e-11 71.2 101 38.6
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 5.5e-11 71.2 101 38.6
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 9.4e-11 70.5 102 37.3
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 3.6e-10 68.6 102 34.3
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 3.9e-09 65.1 104 32.7
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 5.1e-09 64.7 102 33.3
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 4.3e-08 61.6 67 49.3
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 4.3e-08 61.6 74 37.8
Sopen03g040430 Solanum pennellii HOM05D002137 ORTHO05D002144 5.7e-08 61.2 108 33.3
Solyc03g121620.1 Solanum lycopersicum HOM05D002137 ORTHO05D002144 1.3e-07 60.1 107 33.6
Lj3g0022281 Lotus japonicus HOM05D002137 ORTHO05D002144 1.7e-07 59.7 93 37.6
Nn5g26812 Nelumbo nucifera HOM05D008517 ORTHO05D010482 2.2e-07 59.3 91 37.4
Glyma.13G349900 Glycine max HOM05D002137 ORTHO05D002144 4.8e-07 58.2 95 34.7
PGSC0003DMG400002586 Solanum tuberosum HOM05D002137 ORTHO05D002144 8.2e-07 57.4 107 32.7
Peaxi162Scf00038g00154 Petunia axillaris HOM05D002137 ORTHO05D002144 1.4e-06 56.6 86 39.5
Duzib192G0186 Durio zibethinus HOM05D002137 ORTHO05D002144 1.8e-06 56.2 80 38.8
Glyma.15G024400 Glycine max HOM05D002137 ORTHO05D002144 1.8e-06 56.2 95 33.7
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 2.4e-06 55.8 80 37.5
CsaV3_3G043870 Cucumis sativus L. HOM05D002137 ORTHO05D002144 2.4e-06 55.8 107 30.8
CAN.G1389.23 Capsicum annuum HOM05D002137 ORTHO05D002144 3.1e-06 55.5 108 30.6
Nitab4.5_0010788g0030 Nicotiana tabacum HOM05D002137 ORTHO05D002144 3.1e-06 55.5 108 29.6
MELO3C013058.2 Cucumis melo HOM05D002137 ORTHO05D002144 4.1e-06 55.1 107 30.8
arahy.Tifrunner.gnm1.ann1.RD29P1 Arachis hypogaea HOM05D002137 ORTHO05D002144 6.9e-06 54.3 93 33.3
FvH4_6g33440 Fragaria vesca HOM05D002137 ORTHO05D002144 9.1e-06 53.9 88 35.2
FAN14G1585 Fragaria x ananassa HOM05D002137 ORTHO05D002144 9.1e-06 53.9 88 35.2


User provided reference genes

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