Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0068 Trochodendron aralioides HOM05D001502 ORTHO05D002066 4.0e-125 451.4 225 100.0
TAR629G1989 Trochodendron aralioides HOM05D001502 ORTHO05D002066 5.8e-68 261.5 225 62.7
Nn1g01513 Nelumbo nucifera HOM05D001502 ORTHO05D002066 3.9e-64 248.8 222 59.9
Nn6g33445 Nelumbo nucifera HOM05D001502 ORTHO05D002066 1.8e-61 240.0 206 58.7
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 3.3e-55 219.2 224 54.9
Aqoxy7G00337 Aquilegia oxysepala HOM05D001502 ORTHO05D002066 1.2e-49 200.7 224 50.0
CSS0049763 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002066 2.3e-48 196.4 224 50.4
CSS0025049 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002066 3.0e-48 196.1 224 50.4
Cfa012183 Carpinus fangiana HOM05D001502 ORTHO05D002066 2.4e-45 186.4 221 50.7
Haze_08834 Corylus avellana HOM05D001502 ORTHO05D002066 5.3e-45 185.3 221 50.7
Prupe.5G100100 Prunus persica HOM05D001502 ORTHO05D002066 2.0e-44 183.3 229 50.7
Actinidia02006 Actinidia chinensis HOM05D001502 ORTHO05D002066 1.3e-43 180.6 225 46.7
MD06G1083000 Malus domestica HOM05D001502 ORTHO05D002066 2.9e-43 179.5 221 50.2
Cpa.g.sc74.50 Carica papaya HOM05D001502 ORTHO05D002066 3.2e-42 176.0 222 48.6
CiPaw.11G135400 Carya illinoinensis HOM05D001502 ORTHO05D002066 4.2e-42 175.6 224 47.8
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 4.2e-42 175.6 206 47.1
Hma1.2p1_0896F.1_g234020 Hydrangea macrophylla HOM05D001502 ORTHO05D002066 1.2e-41 174.1 226 46.9
Potri.001G104200 Populus trichocarpa HOM05D001502 ORTHO05D002066 2.7e-41 172.9 223 47.5
QL12p033052 Quercus lobata HOM05D001502 ORTHO05D002066 2.7e-41 172.9 221 47.5
Ciclev10019223m.g Citrus clementina HOM05D001502 ORTHO05D002066 4.6e-41 172.2 221 48.0
Atru.chr9.2190 Acer truncatum HOM05D001502 ORTHO05D002066 1.0e-40 171.0 227 48.0
Potri.003G127500 Populus trichocarpa HOM05D001502 ORTHO05D002066 1.3e-40 170.6 226 47.3
Dinv37642 Davidia involucrata HOM05D001502 ORTHO05D002066 8.7e-40 167.9 225 46.7
CSS0049902 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002066 1.5e-39 167.2 224 44.2
Oeu064088.2 Olea europaea HOM05D001502 ORTHO05D002066 3.3e-39 166.0 225 44.9
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 4.3e-39 165.6 220 46.4
Sabra03G0090500 Salix brachista HOM05D001502 ORTHO05D002066 1.6e-38 163.7 226 45.6
Hund14801 Selenicereus undatus HOM05D001502 ORTHO05D002066 2.1e-38 163.3 221 43.0
MSTRG.25607 Avicennia marina HOM05D001502 ORTHO05D002066 3.7e-38 162.5 225 43.1
CiPaw.12G093200 Carya illinoinensis HOM05D001502 ORTHO05D002066 3.7e-38 162.5 224 44.6
vmacro11333 Vaccinium macrocarpon HOM05D001502 ORTHO05D002066 8.2e-38 161.4 206 44.2
Cc08_g14730 Coffea canephora HOM05D001502 ORTHO05D002066 1.8e-37 160.2 227 42.7
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.4e-37 159.8 203 47.3
FvH4_5g02400 Fragaria vesca HOM05D001502 ORTHO05D002066 4.1e-37 159.1 203 46.8
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 4.1e-37 159.1 203 46.8
TWI60G0571 Tripterygium wilfordii HOM05D001502 ORTHO05D002066 4.1e-37 159.1 222 46.8
Eucgr.E00596 Eucalyptus grandis HOM05D001502 ORTHO05D002066 5.3e-37 158.7 224 44.6
AUR62017202 Chenopodium quinoa HOM05D001502 ORTHO05D002066 6.9e-37 158.3 221 43.9
AUR62010680 Chenopodium quinoa HOM05D001502 ORTHO05D002066 1.2e-36 157.5 221 43.4
Sabra01G0078600 Salix brachista HOM05D001502 ORTHO05D002066 2.0e-36 156.8 223 44.4
CsaV3_5G002810 Cucumis sativus L. HOM05D001502 ORTHO05D002066 2.6e-36 156.4 223 44.4
RcHm_v2.0_Chr7g0197711 Rosa chinensis HOM05D001502 ORTHO05D002066 4.5e-36 155.6 221 46.2
Duzib205G1550 Durio zibethinus HOM05D001502 ORTHO05D002066 5.9e-36 155.2 207 46.4
Duzib068G0924 Durio zibethinus HOM05D001502 ORTHO05D002066 7.6e-36 154.8 227 44.9
Nitab4.5_0010968g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002066 1.7e-35 153.7 225 41.8
MELO3C005676.2 Cucumis melo HOM05D001502 ORTHO05D002066 2.9e-35 152.9 223 44.4
Duzib084G0397 Durio zibethinus HOM05D001502 ORTHO05D002066 3.8e-35 152.5 209 46.9
Sc01g0009560 Simmondsia chinensis HOM05D001502 ORTHO05D002066 5.0e-35 152.1 221 43.4
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 6.5e-35 151.8 203 44.8
Nitab4.5_0001615g0180 Nicotiana tabacum HOM05D001502 ORTHO05D002066 1.4e-34 150.6 225 40.9
ClCG01G002710 Citrullus lanatus HOM05D001502 ORTHO05D002066 3.2e-34 149.4 206 44.7
Gohir.D03G151500 Gossypium hirsutum HOM05D001502 ORTHO05D002066 3.2e-34 149.4 207 44.0
COL.COLO4_34462 Corchorus olitorius HOM05D001502 ORTHO05D002066 4.2e-34 149.1 227 44.1
PSO782G4970 Papaver somniferum HOM05D001502 ORTHO05D002066 5.5e-34 148.7 226 44.7
Gorai.003G158900 Gossypium raimondii HOM05D001502 ORTHO05D002066 7.2e-34 148.3 207 44.4
Thecc.03G278700 Theobroma cacao HOM05D001502 ORTHO05D002066 1.2e-33 147.5 207 45.9
Gohir.A03G016400 Gossypium hirsutum HOM05D001502 ORTHO05D002066 3.5e-33 146.0 207 44.0
PSO063G1482 Papaver somniferum HOM05D001502 ORTHO05D002066 1.0e-32 144.4 220 43.2
Ah.12g056910 Amaranthus hybridus HOM05D001502 ORTHO05D002066 1.3e-32 144.1 221 39.4
EL10Ac5g13061 Beta vulgaris HOM05D001502 ORTHO05D002066 1.9e-31 140.2 221 38.0
Hund11469 Selenicereus undatus HOM05D001502 ORTHO05D002066 2.5e-31 139.8 220 40.5
Manes.01G060875 Manihot esculenta HOM05D001502 ORTHO05D002066 9.7e-31 137.9 223 41.7
Peaxi162Scf00119g00830 Petunia axillaris HOM05D001502 ORTHO05D002066 1.3e-30 137.5 206 43.7
MBI17_g28349_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002066 8.2e-30 134.8 205 41.5
Sed0012105 Sechium edule HOM05D001502 ORTHO05D002066 3.1e-29 132.9 206 43.7
CAN.G774.40 Capsicum annuum HOM05D001502 ORTHO05D002066 4.1e-29 132.5 224 39.7
Manes.02G022000 Manihot esculenta HOM05D001502 ORTHO05D002066 6.9e-29 131.7 221 40.7
Glyma.05G207900 Glycine max HOM05D001502 ORTHO05D002066 1.7e-27 127.1 206 39.3
Lj4g0003948 Lotus japonicus HOM05D001502 ORTHO05D002066 2.2e-27 126.7 211 37.4
Carub.0006s3038 Capsella rubella HOM05D001502 ORTHO05D002066 2.9e-27 126.3 225 40.0
DCAR_006741 Daucus carota HOM05D001502 ORTHO05D002066 3.8e-27 125.9 204 40.2
Sed0010190 Sechium edule HOM05D001502 ORTHO05D002066 6.5e-27 125.2 221 41.2
Lj8A231T12 Lonicera japonica HOM05D001502 ORTHO05D002066 8.5e-27 124.8 223 38.6
Lalb_Chr05g0224781 Lupinus albus HOM05D001502 ORTHO05D002066 1.9e-26 123.6 209 37.3
Migut.A00764 Erythranthe guttata HOM05D001502 ORTHO05D002066 2.5e-26 123.2 226 38.1
Solyc08g081060.3 Solanum lycopersicum HOM05D001502 ORTHO05D002066 2.5e-26 123.2 224 38.8
Lalb_Chr16g0389981 Lupinus albus HOM05D001502 ORTHO05D002066 3.2e-26 122.9 206 36.4
Phvul.002G289500 Phaseolus vulgaris HOM05D001502 ORTHO05D002066 4.2e-26 122.5 206 38.8
Sopen08g029380 Solanum pennellii HOM05D001502 ORTHO05D002066 4.2e-26 122.5 224 39.3
AL6G45890 Arabidopsis lyrata HOM05D001502 ORTHO05D002066 9.4e-26 121.3 207 39.6
BcaB05g23826 Brassica carinata HOM05D001502 ORTHO05D002066 2.1e-25 120.2 226 38.1
Sp6g05990 Schrenkiella parvula HOM05D001502 ORTHO05D002066 4.6e-25 119.0 224 38.4
PGSC0003DMG400012340 Solanum tuberosum HOM05D001502 ORTHO05D002066 6.1e-25 118.6 224 38.4
arahy.Tifrunner.gnm1.ann1.TG518A Arachis hypogaea HOM05D001502 ORTHO05D002066 7.9e-25 118.2 211 39.8
arahy.Tifrunner.gnm1.ann1.JB6AVN Arachis hypogaea HOM05D001502 ORTHO05D002066 1.4e-24 117.5 211 39.8
Psat7g033200 Pisum sativum HOM05D001502 ORTHO05D002066 2.3e-24 116.7 204 37.7
AT4G11450 Arabidopsis thaliana HOM05D001502 ORTHO05D002066 3.0e-24 116.3 207 38.6
Aa31LG9G10780 Aethionema arabicum HOM05D001502 ORTHO05D002066 3.9e-24 115.9 227 36.6
CARHR255100 Cardamine hirsuta HOM05D001502 ORTHO05D002066 3.9e-24 115.9 224 37.9
Lj2C192T8 Lonicera japonica HOM05D001502 ORTHO05D002066 3.9e-24 115.9 224 34.8
Thhalv10028472m.g Eutrema salsugineum HOM05D001502 ORTHO05D002066 5.1e-24 115.5 227 38.8
Glyma.01G220300 Glycine max HOM05D001502 ORTHO05D002066 5.1e-24 115.5 211 38.4
Lj8A228T25 Lonicera japonica HOM05D001502 ORTHO05D002066 5.1e-24 115.5 222 36.5
Gohir.A08G182700 Gossypium hirsutum HOM05D001502 ORTHO05D002066 6.7e-24 115.2 199 40.2
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 6.7e-24 115.2 206 35.9
Oeu019188.1 Olea europaea HOM05D001502 ORTHO05D002066 6.7e-24 115.2 206 36.4
THA.LOC104806408 Tarenaya hassleriana HOM05D001502 ORTHO05D002066 6.7e-24 115.2 227 38.3
Glyma.08G014600 Glycine max HOM05D001502 ORTHO05D002066 8.8e-24 114.8 210 37.6
THA.LOC104806997 Tarenaya hassleriana HOM05D001502 ORTHO05D002066 8.8e-24 114.8 227 37.9
THA.LOC104811333 Tarenaya hassleriana HOM05D001502 ORTHO05D002066 8.8e-24 114.8 227 37.9
Gohir.D08G201200 Gossypium hirsutum HOM05D001502 ORTHO05D002066 1.1e-23 114.4 199 40.7
Gorai.004G212100 Gossypium raimondii HOM05D001502 ORTHO05D002066 1.1e-23 114.4 199 40.7
THA.LOC104814560 Tarenaya hassleriana HOM05D001502 ORTHO05D002066 1.1e-23 114.4 205 37.6
VMungo0251G2117 Vigna mungo HOM05D001502 ORTHO05D002066 1.1e-23 114.4 206 37.9
Glyma.11G023400 Glycine max HOM05D001502 ORTHO05D002066 1.5e-23 114.0 211 37.9
vmacro13957 Vaccinium macrocarpon HOM05D001502 ORTHO05D002066 3.3e-23 112.8 225 38.2
Rhsim07G0090900 Rhododendron simsii HOM05D001502 ORTHO05D002066 4.3e-23 112.5 192 40.6
TPR.G12785 Trifolium pratense HOM05D001502 ORTHO05D002066 9.7e-23 111.3 206 35.9
ECA233G1788 Erigeron canadensis HOM05D001502 ORTHO05D002066 1.3e-22 110.9 223 37.2
Ca_17533_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002066 3.7e-22 109.4 205 35.6
DCAR_000609 Daucus carota HOM05D001502 ORTHO05D002066 3.7e-22 109.4 204 39.7
A02p26240 Brassica napus HOM05D001502 ORTHO05D002066 4.8e-22 109.0 226 38.5
BraA02t07625Z Brassica rapa HOM05D001502 ORTHO05D002066 4.8e-22 109.0 226 38.5
ATR0680G014 Amborella trichopoda HOM05D001502 ORTHO05D002066 3.1e-21 106.3 201 37.8
SGA_v2.0_scaffold173G39188 Striga asiatica HOM05D001502 ORTHO05D002066 5.3e-21 105.5 227 32.6
BcaC03g16350 Brassica carinata HOM05D001502 ORTHO05D002066 1.0e-19 101.3 226 37.2
C02p41740 Brassica napus HOM05D001502 ORTHO05D002066 1.0e-19 101.3 226 37.2
BolC2t10190H Brassica oleracea HOM05D001502 ORTHO05D002066 1.0e-19 101.3 226 37.2
HPP92_005071 Vanilla planifolia HOM05D001502 ORTHO05D002066 1.0e-19 101.3 201 32.8
HPP92_005042 Vanilla planifolia HOM05D001502 ORTHO05D002066 1.3e-19 100.9 219 32.4
VMungo1215G3352 Vigna mungo HOM05D001502 ORTHO05D002066 1.3e-19 100.9 209 35.9
SalBow1G7405 Salvia bowleyana HOM05D001502 ORTHO05D002066 2.2e-19 100.1 221 33.0
arahy.Tifrunner.gnm1.ann1.E4NWP9 Arachis hypogaea HOM05D001502 ORTHO05D002066 3.8e-19 99.4 208 36.1
arahy.Tifrunner.gnm1.ann1.Q03LIP Arachis hypogaea HOM05D001502 ORTHO05D002066 6.5e-19 98.6 208 35.6
Os03g0105800 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002066 6.5e-19 98.6 204 31.4
Zm00001eb000500 Zea mays HOM05D001502 ORTHO05D002066 1.6e-17 94.0 219 32.4
Phvul.002G158000 Phaseolus vulgaris HOM05D001502 ORTHO05D002066 2.7e-17 93.2 209 34.9
ECA240G1388 Erigeron canadensis HOM05D001502 ORTHO05D002066 7.9e-17 91.7 213 32.9
Os10g0550750 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002066 6.7e-16 88.6 133 45.9
MD14G1104600 Malus domestica HOM05D001502 ORTHO05D002066 5.7e-15 85.5 63 66.7
HanXRQChr13g0394271 Helianthus annuus HOM05D001502 ORTHO05D002066 2.8e-14 83.2 223 31.8
PGR042G1921 Punica granatum HOM05D001502 ORTHO05D002066 2.8e-14 83.2 149 40.3
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 3.7e-14 82.8 115 48.7
Lsat_1_v5_gn_6_6520 Lactuca sativa HOM05D001502 ORTHO05D002066 4.8e-14 82.4 204 28.4
Ca_24550_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002066 7.0e-13 78.6 186 32.8
Medtr5g010160 Medicago truncatula HOM05D001502 ORTHO05D002066 5.9e-12 75.5 203 32.0
Zm00001eb022970 Zea mays HOM05D001502 ORTHO05D002066 5.0e-11 72.4 153 36.6
CDE02G2066 Ceratophyllum demersum HOM05D001502 ORTHO05D002066 3.2e-10 69.7 223 29.1
HanXRQChr03g0086741 Helianthus annuus HOM05D001502 ORTHO05D002066 2.7e-09 66.6 208 31.2
SGA_v2.0_scaffold96G28935 Striga asiatica HOM05D001502 ORTHO05D002066 2.7e-09 66.6 225 29.3
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 4.0e-08 62.8 211 24.6
CDE09G0464 Ceratophyllum demersum HOM05D001502 ORTHO05D002066 4.0e-08 62.8 211 24.6
TPR.G6717 Trifolium pratense HOM05D001502 ORTHO05D002066 4.0e-08 62.8 206 29.1
A09p13720 Brassica napus HOM05D001502 ORTHO05D002066 2.6e-07 60.1 189 31.2
BraA09t37023Z Brassica rapa HOM05D001502 ORTHO05D002066 4.4e-07 59.3 189 30.2
unitig_88.g27616 Utricularia gibba HOM05D001502 ORTHO05D002066 2.8e-06 56.6 148 29.1
BcaNung07198 Brassica carinata HOM05D001502 ORTHO05D002066 6.3e-06 55.5 189 29.6
C09p16370 Brassica napus HOM05D001502 ORTHO05D002066 6.3e-06 55.5 189 29.6
BolC9t54548H Brassica oleracea HOM05D001502 ORTHO05D002066 6.3e-06 55.5 189 29.6


User provided reference genes

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