Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 0.0e+00 1281.9 658 100.0
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-281 972.2 661 76.6
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 4.8e-264 914.4 658 71.6
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 5.5e-260 901.0 646 71.8
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.8e-258 896.0 681 69.3
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 6.7e-258 894.0 633 71.6
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.5e-254 881.7 636 71.2
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 7.7e-254 880.6 687 67.4
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.3e-253 879.8 637 70.8
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 5.0e-253 877.9 622 73.8
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 5.0e-253 877.9 640 70.8
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 6.5e-253 877.5 613 71.1
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 6.1e-251 870.9 622 72.8
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 2.2e-248 862.4 639 69.8
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 6.3e-248 860.9 635 69.8
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.8e-247 859.4 701 64.5
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 1.6e-246 856.3 629 70.0
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.0e-245 853.6 618 71.2
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.3e-245 853.2 656 67.7
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 2.2e-245 852.4 645 69.8
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.5e-244 847.8 542 78.2
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 9.4e-244 847.0 614 70.7
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 3.6e-243 845.1 617 70.0
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 3.6e-243 845.1 617 70.0
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 4.7e-243 844.7 531 79.7
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.0e-242 843.6 640 68.3
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 5.2e-242 841.3 618 68.6
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.7e-240 836.3 637 69.1
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 2.2e-240 835.9 622 70.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 2.2e-240 835.9 643 67.8
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 2.2e-240 835.9 626 68.8
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.2e-240 835.9 623 68.7
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.7e-240 835.1 659 67.4
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 3.7e-240 835.1 659 67.4
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 6.3e-240 834.3 654 66.4
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 1.1e-239 833.6 651 67.9
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.1e-239 833.6 659 67.4
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.3e-237 826.6 656 65.7
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.9e-236 822.8 618 67.6
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 7.2e-236 820.8 640 65.8
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 3.0e-234 815.5 574 71.4
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.0e-234 815.1 649 64.1
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 8.9e-234 813.9 647 65.2
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 2.6e-233 812.4 616 68.0
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 1.1e-231 807.0 564 72.2
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 3.2e-231 805.4 641 65.2
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.0e-229 800.4 569 71.5
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 8.6e-229 797.3 636 66.0
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 8.6e-229 797.3 648 65.9
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 1.5e-228 796.6 649 64.3
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 5.6e-228 794.7 623 66.5
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 3.6e-227 792.0 634 65.5
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 5.8e-225 784.6 660 62.4
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 9.8e-225 783.9 667 63.1
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 3.2e-223 778.9 633 64.0
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 2.0e-222 776.2 659 63.4
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 4.6e-222 775.0 625 65.6
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.5e-220 770.0 629 63.8
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.5e-220 770.0 642 62.9
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 6.2e-219 764.6 622 63.2
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.1e-218 763.8 649 61.9
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 4.0e-218 761.9 626 65.2
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 4.4e-217 758.4 598 66.4
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.4e-217 758.4 607 66.1
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 7.5e-217 757.7 611 66.1
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.2e-215 752.3 611 65.5
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.3e-213 746.9 626 64.5
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.7e-213 746.5 566 68.2
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 2.3e-213 746.1 665 62.1
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 3.3e-212 742.3 662 60.9
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 4.3e-212 741.9 620 63.2
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.2e-209 733.8 631 63.1
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 2.6e-209 732.6 622 62.1
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 9.9e-209 730.7 610 64.4
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 2.2e-208 729.6 583 63.6
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 2.9e-208 729.2 628 61.8
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 7.1e-207 724.5 531 69.3
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.9e-204 716.5 518 68.7
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 7.6e-201 704.5 628 59.4
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.9e-200 702.6 637 59.7
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 3.2e-199 699.1 637 59.3
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.1e-198 696.4 670 56.6
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 6.0e-198 694.9 623 59.6
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 8.7e-197 691.0 623 59.2
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 1.8e-194 683.3 639 58.4
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-189 666.4 549 66.5
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.1e-188 664.1 623 56.3
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 7.3e-188 661.4 507 68.0
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.1e-178 629.4 608 56.1
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.2e-177 627.5 454 70.5
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 7.4e-172 608.2 626 53.7
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.6e-169 598.2 426 73.0
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 4.6e-166 589.0 469 67.2
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 7.2e-159 565.1 660 50.0
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 8.8e-157 558.1 447 65.8
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 1.4e-154 550.8 617 52.0
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.8e-154 550.4 651 49.6
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-150 537.3 332 81.6
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 4.7e-150 535.8 661 47.4
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.8e-149 533.9 640 50.2
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.9e-144 516.5 393 68.2
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 1.8e-141 507.3 354 70.9
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.0e-136 491.5 551 52.6
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 7.2e-135 485.3 364 68.4
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 6.1e-126 455.7 316 71.2
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.3e-123 448.0 503 52.1
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 6.4e-107 392.5 315 67.3
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-94 351.7 215 83.7
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 4.0e-93 346.7 275 67.6
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 7.8e-89 332.4 278 66.5
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.1e-85 320.5 194 82.5
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.6e-84 315.8 209 79.4
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.3e-79 300.4 351 47.0
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-76 292.0 200 75.5
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.1e-69 267.3 200 70.0
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.5e-66 256.5 168 74.4
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.7e-59 235.0 174 69.5
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.9e-51 207.6 174 64.4
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.8e-51 207.2 174 64.4
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.5e-50 204.5 130 77.7
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.3e-48 198.0 168 58.3
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.9e-43 181.0 153 63.4
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.6e-41 175.3 252 46.8
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 9.7e-39 166.0 105 77.1
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-38 165.2 105 76.2
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.3e-37 160.2 93 87.1
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.5e-34 151.4 169 57.4
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.2e-34 151.0 97 79.4
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.2e-30 138.3 153 52.9
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.1e-29 134.4 80 85.0
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.5e-26 123.6 78 75.6
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 1.7e-22 112.1 306 30.1
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 2.2e-22 111.7 58 89.7
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 8.2e-22 109.8 134 49.3
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 8.2e-22 109.8 86 66.3
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 6.5e-19 100.1 64 68.8
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 4.2e-18 97.4 78 64.1
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.7e-11 75.5 46 69.6
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 5.0e-11 73.9 89 46.1
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 6.5e-11 73.6 46 67.4
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 6.5e-11 73.6 46 67.4
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 2.0e-07 62.0 108 37.0
Cpa.g.sc64.83 Carica papaya HOM05D005920 ORTHO05D007211 5.7e-07 60.5 127 37.0
CANSAT25G3381 Cannabis sativa HOM05D005920 ORTHO05D007211 1.3e-06 59.3 126 32.5
Gohir.A05G234800 Gossypium hirsutum HOM05D005920 ORTHO05D007211 1.7e-06 58.9 119 33.6
EL10Ac1g01005 Beta vulgaris HOM05D005920 ORTHO05D007211 2.8e-06 58.2 118 34.7
Glyma.13G080100 Glycine max HOM05D005920 ORTHO05D007211 3.7e-06 57.8 118 33.9
arahy.Tifrunner.gnm1.ann1.GZGN8Y Arachis hypogaea HOM05D005920 ORTHO05D007211 4.9e-06 57.4 151 31.1
CiPaw.06G030600 Carya illinoinensis HOM05D005920 ORTHO05D007211 4.9e-06 57.4 115 33.0
Glyma.14G149300 Glycine max HOM05D005920 ORTHO05D007211 4.9e-06 57.4 118 33.9
Potri.005G177400 Populus trichocarpa HOM05D005920 ORTHO05D007211 4.9e-06 57.4 98 38.8
Solyc11g012900.3 Solanum lycopersicum HOM05D005920 ORTHO05D007211 4.9e-06 57.4 116 33.6
Gohir.D05G237100 Gossypium hirsutum HOM05D005920 ORTHO05D007211 6.3e-06 57.0 102 36.3
Gorai.009G245500 Gossypium raimondii HOM05D005920 ORTHO05D007211 6.3e-06 57.0 102 36.3
AUR62019083 Chenopodium quinoa HOM05D005920 ORTHO05D007211 8.3e-06 56.6 118 32.2
Duzib116G0551 Durio zibethinus HOM05D005920 ORTHO05D007211 8.3e-06 56.6 119 33.6
MD15G1349900 Malus domestica HOM05D005920 ORTHO05D007211 8.3e-06 56.6 115 32.2
Peaxi162Scf00914g00016 Petunia axillaris HOM05D005920 ORTHO05D007211 8.3e-06 56.6 98 37.8
Sabra05G0133900 Salix brachista HOM05D005920 ORTHO05D007211 8.3e-06 56.6 98 38.8


User provided reference genes

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