Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 0.0e+00 1367.1 716 100.0
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 0.0e+00 1332.0 716 97.8
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 8.8e-70 269.2 822 34.1
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.6e-58 231.9 908 31.2
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 7.8e-34 149.8 845 27.9
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 6.6e-33 146.7 785 28.4
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.7e-31 140.6 854 27.5
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 3.8e-28 131.0 583 30.0
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 4.2e-27 127.5 472 30.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.4e-27 127.1 269 37.9
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.2e-26 125.9 835 26.8
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.1e-26 125.2 242 41.7
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 5.1e-25 120.6 470 32.6
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 3.3e-24 117.9 813 25.0
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.3e-24 117.9 778 27.9
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 8.1e-23 113.2 753 25.5
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.4e-22 111.7 241 40.7
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.4e-22 111.7 155 47.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 3.1e-22 111.3 510 30.2
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.5e-21 107.5 288 34.4
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 4.5e-21 107.5 799 26.7
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 5.8e-21 107.1 768 24.9
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 7.6e-21 106.7 620 27.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 9.9e-21 106.3 498 29.9
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.3e-20 105.9 530 29.1
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 6.4e-20 103.6 239 38.1
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 8.4e-20 103.2 782 26.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.4e-19 102.4 395 29.4
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.9e-19 102.1 335 32.5
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 2.4e-19 101.7 268 35.1
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 9.3e-19 99.8 784 25.6
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 9.3e-19 99.8 330 34.8
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.2e-18 99.4 239 37.7
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.6e-18 99.0 283 34.3
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 3.5e-18 97.8 408 32.1
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.5e-18 97.8 754 25.9
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.6e-18 97.4 248 37.1
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 7.9e-18 96.7 340 32.4
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.0e-17 96.3 251 34.3
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.8e-17 95.5 221 41.6
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.3e-17 95.1 309 35.0
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.3e-17 95.1 765 24.2
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.3e-17 95.1 285 33.0
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 3.9e-17 94.4 256 33.6
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.5e-16 91.7 749 26.2
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 4.3e-16 90.9 289 34.6
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 4.3e-16 90.9 797 24.7
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 7.4e-16 90.1 254 35.8
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 7.4e-16 90.1 87 58.6
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 7.4e-16 90.1 749 24.6
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 9.6e-16 89.7 430 29.3
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.6e-15 89.0 397 29.2
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.1e-15 88.6 425 29.9
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.1e-15 88.6 770 25.3
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.8e-15 88.2 247 34.4
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.7e-15 87.8 769 23.8
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.7e-15 87.8 283 34.6
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 4.8e-15 87.4 288 34.4
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 8.1e-15 86.7 273 34.4
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.1e-14 86.3 426 30.5
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.4e-14 85.9 258 34.1
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.4e-14 85.9 278 32.4
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.4e-14 85.9 111 49.5
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.4e-14 85.9 443 28.0
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-14 85.5 738 24.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.8e-14 85.5 367 30.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.8e-14 85.5 455 26.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.4e-14 85.1 742 24.9
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 3.1e-14 84.7 375 30.1
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.1e-14 84.7 91 51.6
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 4.0e-14 84.3 435 29.9
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.0e-14 84.3 491 29.5
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 6.9e-14 83.6 414 28.7
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 9.0e-14 83.2 234 35.0
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.2e-13 82.8 380 30.0
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.2e-13 82.8 458 27.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.2e-13 82.8 441 27.4
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.0e-13 82.0 271 35.4
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.6e-13 81.6 350 30.6
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.6e-13 81.6 788 25.5
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 3.4e-13 81.3 727 24.9
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 4.5e-13 80.9 278 32.4
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 7.6e-13 80.1 429 28.9
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 7.6e-13 80.1 184 38.0
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.3e-12 79.3 262 33.2
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.7e-12 79.0 194 39.2
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.7e-12 79.0 392 26.5
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.7e-12 79.0 305 31.1
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-12 78.6 187 36.9
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.2e-12 78.6 187 36.9
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 2.9e-12 78.2 538 26.0
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 3.8e-12 77.8 273 33.3
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 6.4e-12 77.0 588 25.9
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 6.4e-12 77.0 89 51.7
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 8.4e-12 76.6 431 29.5
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 8.4e-12 76.6 259 29.7
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.1e-11 76.3 259 29.7
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.9e-11 75.5 280 31.8
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.9e-11 75.5 198 33.8
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.4e-11 75.1 307 30.6
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 3.2e-11 74.7 283 33.2
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 4.2e-11 74.3 280 32.1
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 4.2e-11 74.3 242 32.6
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 5.5e-11 73.9 616 23.9
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 5.5e-11 73.9 86 50.0
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 5.5e-11 73.9 252 31.7
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 7.1e-11 73.6 457 26.5
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 7.1e-11 73.6 240 32.5
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 3.5e-10 71.2 687 24.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.6e-10 70.9 312 29.2
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 7.9e-10 70.1 410 25.9
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.0e-09 69.7 396 26.0
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.3e-09 69.3 374 25.9
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-09 68.6 250 30.0
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-09 68.6 250 30.0
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 2.3e-09 68.6 250 30.0
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 2.3e-09 68.6 272 30.5
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.0e-09 68.2 458 25.5
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 3.9e-09 67.8 490 24.7
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 3.9e-09 67.8 490 24.7
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.9e-08 65.5 347 26.5
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 3.3e-08 64.7 371 25.9
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 4.3e-08 64.3 618 22.8
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 4.3e-08 64.3 255 30.6
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 7.4e-08 63.5 272 29.4
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 9.6e-08 63.2 92 42.4
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 9.6e-08 63.2 39 74.4
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.3e-07 62.8 270 31.5
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.3e-07 62.8 86 46.5
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.6e-07 62.4 757 22.7
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.6e-07 62.4 431 27.1
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 2.1e-07 62.0 272 29.0
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.8e-07 61.6 800 24.1
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.7e-07 61.2 57 54.4
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 6.2e-07 60.5 266 27.8
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.8e-06 58.9 39 66.7
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 2.4e-06 58.5 245 33.1
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 2.4e-06 58.5 95 41.1
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 3.1e-06 58.2 37 73.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 3.1e-06 58.2 37 73.0
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 3.1e-06 58.2 265 29.4
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 4.0e-06 57.8 107 43.0
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 5.3e-06 57.4 750 24.0
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 6.9e-06 57.0 113 38.1
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.0e-06 56.6 259 26.6
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 9.0e-06 56.6 169 36.1


User provided reference genes

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