Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1565 Trochodendron aralioides HOM05D002213 ORTHO05D002297 1.3e-66 256.1 118 100.0
Hund23460 Selenicereus undatus HOM05D002213 ORTHO05D002297 1.6e-13 79.7 53 67.9
AUR62043468 Chenopodium quinoa HOM05D002213 ORTHO05D002297 7.6e-11 70.9 63 55.6
Nitab4.5_0007613g0020 Nicotiana tabacum HOM05D002213 ORTHO05D002297 1.1e-09 67.0 61 57.4
Zm00001eb433720 Zea mays HOM05D002213 ORTHO05D002297 1.6e-08 63.2 36 80.6
Dinv25175 Davidia involucrata HOM05D002213 ORTHO05D002297 2.1e-08 62.8 34 85.3
Aqoxy5G02332 Aquilegia oxysepala HOM05D002213 ORTHO05D002297 2.7e-08 62.4 34 88.2
Gohir.D11G147850 Gossypium hirsutum HOM05D002213 ORTHO05D002297 2.7e-08 62.4 66 50.0
Nn1g00649 Nelumbo nucifera HOM05D002213 ORTHO05D002297 2.7e-08 62.4 34 85.3
MSTRG.12787 Avicennia marina HOM05D002213 ORTHO05D002297 4.6e-08 61.6 34 82.4
PSO063G3095 Papaver somniferum HOM05D002213 ORTHO05D002297 4.6e-08 61.6 34 85.3
PSO782G1652 Papaver somniferum HOM05D002213 ORTHO05D002297 4.6e-08 61.6 34 85.3
CSS0039407 Camellia sinensis var. sinensis HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
Dinv28906 Davidia involucrata HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
Gohir.A06G141233 Gossypium hirsutum HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
Gohir.A11G247050 Gossypium hirsutum HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
Gohir.D05G138550 Gossypium hirsutum HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
Gohir.D06G053650 Gossypium hirsutum HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
Gohir.D08G096775 Gossypium hirsutum HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
Gohir.D13G159050 Gossypium hirsutum HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
PSO339G3995 Papaver somniferum HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 85.3
SGA_v2.0_scaffold42G16125 Striga asiatica HOM05D002213 ORTHO05D002297 6.0e-08 61.2 34 82.4
CiPaw.01G102800 Carya illinoinensis HOM05D002213 ORTHO05D002297 7.9e-08 60.8 34 82.4
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 7.9e-08 60.8 34 82.4
PGSC0003DMG400021199 Solanum tuberosum HOM05D002213 ORTHO05D002297 7.9e-08 60.8 34 79.4
SGA_v2.0_scaffold6G03418 Striga asiatica HOM05D002213 ORTHO05D002297 7.9e-08 60.8 34 79.4
TAR372G0003 Trochodendron aralioides HOM05D002213 ORTHO05D002297 7.9e-08 60.8 34 85.3
HPP92_025454 Vanilla planifolia HOM05D002213 ORTHO05D002297 7.9e-08 60.8 34 82.4
Actinidia31475 Actinidia chinensis HOM05D002213 ORTHO05D002297 1.0e-07 60.5 34 76.5
MSTRG.18013 Avicennia marina HOM05D002213 ORTHO05D002297 1.0e-07 60.5 34 73.5
MD04G1038100 Malus domestica HOM05D002213 ORTHO05D002297 1.0e-07 60.5 34 82.4
Potri.007G124400 Populus trichocarpa HOM05D002213 ORTHO05D002297 1.0e-07 60.5 34 82.4
Potri.017G036000 Populus trichocarpa HOM05D002213 ORTHO05D002297 1.0e-07 60.5 34 82.4
Sabra17G0022800 Salix brachista HOM05D002213 ORTHO05D002297 1.0e-07 60.5 34 82.4
Sabra17G0023500 Salix brachista HOM05D002213 ORTHO05D002297 1.0e-07 60.5 34 82.4
Zm00001eb400510 Zea mays HOM05D002213 ORTHO05D002297 1.0e-07 60.5 34 79.4
Actinidia10876 Actinidia chinensis HOM05D002213 ORTHO05D002297 1.3e-07 60.1 34 76.5
AUR62007213 Chenopodium quinoa HOM05D002213 ORTHO05D002297 1.3e-07 60.1 34 82.4
AUR62018788 Chenopodium quinoa HOM05D002213 ORTHO05D002297 1.3e-07 60.1 34 82.4
Gohir.A04G129906 Gossypium hirsutum HOM05D002213 ORTHO05D002297 1.3e-07 60.1 34 79.4
MD13G1259200 Malus domestica HOM05D002213 ORTHO05D002297 1.3e-07 60.1 34 82.4
AUR62012720 Chenopodium quinoa HOM05D002213 ORTHO05D002297 1.8e-07 59.7 36 72.2
AUR62021936 Chenopodium quinoa HOM05D002213 ORTHO05D002297 1.8e-07 59.7 36 72.2
Gohir.D05G251400 Gossypium hirsutum HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 79.4
Gohir.D07G139851 Gossypium hirsutum HOM05D002213 ORTHO05D002297 1.8e-07 59.7 33 81.8
Gohir.D13G034533 Gossypium hirsutum HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 79.4
Gorai.009G262800 Gossypium raimondii HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 79.4
Hma1.2p1_0311F.1_g121190 Hydrangea macrophylla HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 79.4
Oeu034488.1 Olea europaea HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 79.4
Os03g0209400 Oryza sativa ssp. japonica HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 79.4
TWI15G0003 Tripterygium wilfordii HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 79.4
TWI15G1041 Tripterygium wilfordii HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 79.4
TAR375G0601 Trochodendron aralioides HOM05D002213 ORTHO05D002297 1.8e-07 59.7 34 82.4
MSTRG.20945 Avicennia marina HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 79.4
CANSAT78G0754 Cannabis sativa HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 82.4
CiPaw.02G056400 Carya illinoinensis HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 79.4
Cc01_g02710 Coffea canephora HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 79.4
DCAR_005598 Daucus carota HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 79.4
MBI04_g03339_MAGBIO Magnolia biondii HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 76.5
Manes.04G048900 Manihot esculenta HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 79.4
Rhsim07G0121200 Rhododendron simsii HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 76.5
RcHm_v2.0_Chr4g0407571 Rosa chinensis HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 79.4
SalBow3G1704 Salvia bowleyana HOM05D002213 ORTHO05D002297 2.3e-07 59.3 33 78.8
SalBow6G6664 Salvia bowleyana HOM05D002213 ORTHO05D002297 2.3e-07 59.3 33 78.8
Solyc02g069610.3 Solanum lycopersicum HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 76.5
Sopen02g018740 Solanum pennellii HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 76.5
vmacro14145 Vaccinium macrocarpon HOM05D002213 ORTHO05D002297 2.3e-07 59.3 34 76.5
Migut.N00570 Erythranthe guttata HOM05D002213 ORTHO05D002297 3.0e-07 58.9 34 76.5
Gohir.A13G093445 Gossypium hirsutum HOM05D002213 ORTHO05D002297 3.0e-07 58.9 33 81.8
Gorai.003G127100 Gossypium raimondii HOM05D002213 ORTHO05D002297 3.0e-07 58.9 34 79.4
Lalb_Chr05g0220041 Lupinus albus HOM05D002213 ORTHO05D002297 3.0e-07 58.9 34 76.5
PGR083G1189 Punica granatum HOM05D002213 ORTHO05D002297 3.0e-07 58.9 34 76.5
Atru.chr4.288 Acer truncatum HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 79.4
Haze_00716 Corylus avellana HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 79.4
Duzib177G0706 Durio zibethinus HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 79.4
Duzib268G0218 Durio zibethinus HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 79.4
Eucgr.A00252 Eucalyptus grandis HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 76.5
Gohir.A05G247800 Gossypium hirsutum HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 76.5
QL06p012278 Quercus lobata HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 76.5
Hund14437 Selenicereus undatus HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 76.5
Sc22g0001320 Simmondsia chinensis HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 76.5
THA.LOC104817229 Tarenaya hassleriana HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 76.5
TWI77G0390 Tripterygium wilfordii HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 76.5
GSVIVG01013243001 Vitis vinifera HOM05D002213 ORTHO05D002297 3.9e-07 58.5 34 76.5
Zm00001eb007150 Zea mays HOM05D002213 ORTHO05D002297 3.9e-07 58.5 33 81.8
Ah.09g234810 Amaranthus hybridus HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
EL10Ac5g12202 Beta vulgaris HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
EL10As14g24065 Beta vulgaris HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
Cpa.g.sc3.297 Carica papaya HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
CDE02G0825 Ceratophyllum demersum HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 82.4
ClCG07G015830 Citrullus lanatus HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
CsaV3_4G003550 Cucumis sativus L. HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
ECA240G2221 Erigeron canadensis HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
FvH4_4g11330 Fragaria vesca HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 73.5
FAN07G0352 Fragaria x ananassa HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 73.5
FAN17G2065 Fragaria x ananassa HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 73.5
HanXRQChr08g0227931 Helianthus annuus HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 70.6
Oeu024285.1 Olea europaea HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 70.6
RcHm_v2.0_Chr4g0396481 Rosa chinensis HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
Sed0002718 Sechium edule HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 73.5
Sed0013506 Sechium edule HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
Sc17g0007420 Simmondsia chinensis HOM05D002213 ORTHO05D002297 5.1e-07 58.2 33 78.8
Thecc.08G179600 Theobroma cacao HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 76.5
TPR.G15865 Trifolium pratense HOM05D002213 ORTHO05D002297 5.1e-07 58.2 34 73.5
Ciclev10027142m.g Citrus clementina HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 76.5
MELO3C017698.2 Cucumis melo HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 73.5
Dinv43587 Davidia involucrata HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 79.4
Glyma.02G279400 Glycine max HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 70.6
Glyma.14G035300 Glycine max HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 73.5
Lsat_1_v5_gn_6_68221 Lactuca sativa HOM05D002213 ORTHO05D002297 6.7e-07 57.8 36 72.2
Oeu024283.1 Olea europaea HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 67.6
Peaxi162Scf00273g00019 Petunia axillaris HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 76.5
Peaxi162Scf00738g00121 Petunia axillaris HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 73.5
THA.LOC104802458 Tarenaya hassleriana HOM05D002213 ORTHO05D002297 6.7e-07 57.8 34 76.5
Cpa.g.sc904.5 Carica papaya HOM05D002213 ORTHO05D002297 8.7e-07 57.4 34 76.5
Migut.D02545 Erythranthe guttata HOM05D002213 ORTHO05D002297 8.7e-07 57.4 34 73.5
Lsat_1_v5_gn_3_16041 Lactuca sativa HOM05D002213 ORTHO05D002297 8.7e-07 57.4 34 73.5
LjContig00564g0023452 Lotus japonicus HOM05D002213 ORTHO05D002297 8.7e-07 57.4 34 73.5
Lalb_Chr04g0249231 Lupinus albus HOM05D002213 ORTHO05D002297 8.7e-07 57.4 34 73.5
Lalb_Chr17g0347891 Lupinus albus HOM05D002213 ORTHO05D002297 8.7e-07 57.4 34 73.5
Nitab4.5_0000254g0060 Nicotiana tabacum HOM05D002213 ORTHO05D002297 8.7e-07 57.4 34 76.5
Nitab4.5_0005752g0040 Nicotiana tabacum HOM05D002213 ORTHO05D002297 8.7e-07 57.4 34 76.5
Ah.12g053720 Amaranthus hybridus HOM05D002213 ORTHO05D002297 1.1e-06 57.0 34 76.5
CAN.G675.33 Capsicum annuum HOM05D002213 ORTHO05D002297 1.1e-06 57.0 34 73.5
ECA233G5467 Erigeron canadensis HOM05D002213 ORTHO05D002297 1.1e-06 57.0 34 73.5
Manes.11G116100 Manihot esculenta HOM05D002213 ORTHO05D002297 1.1e-06 57.0 34 76.5
Phvul.008G201300 Phaseolus vulgaris HOM05D002213 ORTHO05D002297 1.1e-06 57.0 34 70.6
VMungo0647G2572 Vigna mungo HOM05D002213 ORTHO05D002297 1.1e-06 57.0 34 70.6
Atru.chr11.1091 Acer truncatum HOM05D002213 ORTHO05D002297 1.5e-06 56.6 34 73.5
EL10Ac8g20073 Beta vulgaris HOM05D002213 ORTHO05D002297 1.5e-06 56.6 34 73.5
Glyma.20G040900 Glycine max HOM05D002213 ORTHO05D002297 1.5e-06 56.6 34 70.6
Phvul.009G233000 Phaseolus vulgaris HOM05D002213 ORTHO05D002297 1.5e-06 56.6 34 70.6
Rhsim11G0009500 Rhododendron simsii HOM05D002213 ORTHO05D002297 1.5e-06 56.6 34 76.5
PGSC0003DMG400024130 Solanum tuberosum HOM05D002213 ORTHO05D002297 1.5e-06 56.6 34 73.5
unitig_0.g1211 Utricularia gibba HOM05D002213 ORTHO05D002297 1.5e-06 56.6 34 76.5
CAN.G391.2 Capsicum annuum HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 70.6
Glyma.07G231900 Glycine max HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 67.6
Gohir.A13G122100 Gossypium hirsutum HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 70.6
Gohir.D13G125900 Gossypium hirsutum HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 70.6
Gorai.013G141000 Gossypium raimondii HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 70.6
Psat0ss3759g0120 Pisum sativum HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 70.6
THA.LOC104820870 Tarenaya hassleriana HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 76.5
TAR629G1575 Trochodendron aralioides HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 79.4
vmacro00360 Vaccinium macrocarpon HOM05D002213 ORTHO05D002297 1.9e-06 56.2 34 76.5
CARHR258990 Cardamine hirsuta HOM05D002213 ORTHO05D002297 2.5e-06 55.8 34 73.5
Medtr5g089500 Medicago truncatula HOM05D002213 ORTHO05D002297 2.5e-06 55.8 34 70.6
HPP92_028479 Vanilla planifolia HOM05D001590 ORTHO05D001495 2.5e-06 55.8 34 70.6
Aa31LG1G23080 Aethionema arabicum HOM05D001948 ORTHO05D002297 3.3e-06 55.5 34 70.6
ATR0332G036 Amborella trichopoda HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 73.5
AL6G10660 Arabidopsis lyrata HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 70.6
AT3G49420 Arabidopsis thaliana HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 70.6
AT5G01430 Arabidopsis thaliana HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 70.6
arahy.Tifrunner.gnm1.ann1.525WGR Arachis hypogaea HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 70.6
Cc02_g25660 Coffea canephora HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 73.5
Gohir.D08G251100 Gossypium hirsutum HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 73.5
Gorai.004G267800 Gossypium raimondii HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 73.5
HanXRQChr06g0167211 Helianthus annuus HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 73.5
Os10g0337600 Oryza sativa ssp. japonica HOM05D002213 ORTHO05D002297 3.3e-06 55.5 34 76.5
BcaB01g06097 Brassica carinata HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
BcaC03g13077 Brassica carinata HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
A03p00310 Brassica napus HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
BolC2t06014H Brassica oleracea HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
BolC3t12613H Brassica oleracea HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
BraA02t04686Z Brassica rapa HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
BraA03t09422Z Brassica rapa HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
Carub.0006s0039 Capsella rubella HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
Thhalv10005317m.g Eutrema salsugineum HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
Thhalv10015462m.g Eutrema salsugineum HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 70.6
RcHm_v2.0_Chr6g0272261 Rosa chinensis HOM05D002213 ORTHO05D002297 4.3e-06 55.1 34 79.4
Prupe.1G188000 Prunus persica HOM05D002213 ORTHO05D002297 5.6e-06 54.7 34 70.6
BcaC09g47730 Brassica carinata HOM05D002213 ORTHO05D002297 7.4e-06 54.3 34 67.6
BNapus_Darmor_BZH_scaffold_162p00060 Brassica napus HOM05D002213 ORTHO05D002297 7.4e-06 54.3 34 67.6
BolC1t05841H Brassica oleracea HOM05D002213 ORTHO05D002297 7.4e-06 54.3 34 67.6
CDE12G0225 Ceratophyllum demersum HOM05D002213 ORTHO05D002297 7.4e-06 54.3 34 73.5
SMO351G0390 Selaginella moellendorffii HOM05D002213 ORTHO05D002297 7.4e-06 54.3 34 70.6
VMungo0540G1390 Vigna mungo HOM05D002213 ORTHO05D002297 7.4e-06 54.3 34 67.6
arahy.Tifrunner.gnm1.ann1.E042AL Arachis hypogaea HOM05D002213 ORTHO05D002297 9.6e-06 53.9 34 67.6
BcaB05g21924 Brassica carinata HOM05D002213 ORTHO05D002297 9.6e-06 53.9 34 67.6
HanXRQChr03g0087001 Helianthus annuus HOM05D002213 ORTHO05D002297 9.6e-06 53.9 34 73.5
Lj9C550T5 Lonicera japonica HOM05D002213 ORTHO05D002297 9.6e-06 53.9 33 72.7
Manes.18G107400 Manihot esculenta HOM05D002213 ORTHO05D002297 9.6e-06 53.9 34 64.7
Sp6g40730 Schrenkiella parvula HOM05D002213 ORTHO05D002297 9.6e-06 53.9 34 70.6


User provided reference genes

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