Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 8.1e-132 473.8 246 100.0
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 4.0e-70 268.9 244 63.1
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.9e-68 261.9 245 61.6
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.1e-59 234.2 250 54.8
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.7e-58 229.6 249 55.0
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.9e-57 225.7 264 50.0
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.9e-56 223.4 257 54.5
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.5e-56 223.0 242 51.7
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 9.5e-56 221.1 242 51.7
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 7.5e-53 211.5 243 52.7
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 1.3e-52 210.7 200 59.0
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 2.2e-52 209.9 250 51.6
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 2.2e-52 209.9 214 55.1
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 4.9e-52 208.8 240 50.4
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 8.3e-52 208.0 208 54.3
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.4e-51 207.2 250 49.2
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.9e-51 206.8 182 63.7
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 2.7e-50 203.0 239 51.5
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 4.6e-50 202.2 237 51.9
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 7.8e-50 201.4 242 51.2
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 6.6e-49 198.4 194 56.2
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 6.6e-49 198.4 220 55.0
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 8.6e-49 198.0 181 58.0
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.1e-48 197.6 242 50.0
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 2.5e-48 196.4 252 47.2
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 7.3e-48 194.9 237 47.7
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 3.6e-47 192.6 245 46.5
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.7e-47 192.2 226 51.8
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 4.7e-47 192.2 181 58.0
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 8.1e-47 191.4 213 48.4
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.1e-46 191.0 256 47.7
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 8.9e-46 188.0 243 47.7
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.2e-45 187.6 250 48.4
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 2.6e-45 186.4 246 46.3
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 7.5e-45 184.9 209 54.1
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 7.5e-45 184.9 205 53.7
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 2.2e-44 183.3 252 45.6
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 4.9e-44 182.2 250 45.2
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 8.3e-44 181.4 161 57.8
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-43 181.0 242 47.5
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.1e-43 181.0 213 49.8
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.9e-43 180.3 241 45.6
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 7.1e-43 178.3 174 52.9
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 2.7e-42 176.4 234 45.3
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 3.5e-42 176.0 240 47.1
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 4.6e-42 175.6 180 52.8
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.7e-41 173.7 236 45.8
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 2.3e-41 173.3 249 43.8
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 3.9e-41 172.6 259 44.0
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 5.1e-41 172.2 241 44.0
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 8.6e-41 171.4 242 44.6
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 8.6e-41 171.4 204 49.0
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 8.6e-41 171.4 175 56.0
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.1e-40 171.0 264 45.1
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 3.3e-40 169.5 199 49.2
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 4.3e-40 169.1 219 48.9
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 2.1e-39 166.8 245 44.5
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 8.1e-39 164.9 208 43.8
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 6.8e-38 161.8 237 44.7
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.1e-35 154.5 233 42.9
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 2.4e-35 153.3 228 43.9
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 3.2e-35 152.9 235 42.6
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 6.0e-34 148.7 246 41.1
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 7.8e-34 148.3 236 41.9
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.0e-33 147.9 121 59.5
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 2.3e-33 146.7 185 46.5
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 6.6e-33 145.2 236 40.7
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.9e-32 143.7 202 43.6
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.9e-32 143.7 185 45.4
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 4.3e-32 142.5 248 43.1
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 7.3e-32 141.7 185 45.4
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 7.3e-32 141.7 185 45.4
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.4e-30 136.7 247 38.1
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 3.1e-30 136.3 249 37.8
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 4.0e-30 136.0 158 45.6
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 4.0e-30 136.0 185 43.2
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 5.2e-30 135.6 260 39.2
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 3.4e-29 132.9 261 39.5
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 5.8e-29 132.1 262 38.9
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.5e-24 117.5 185 38.9
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 1.6e-23 114.0 151 40.4
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 2.1e-23 113.6 152 38.8
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 4.8e-23 112.5 170 35.9
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 6.2e-23 112.1 157 38.9
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 8.1e-23 111.7 128 41.4
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 1.4e-22 110.9 166 36.1
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.8e-22 110.5 169 36.1
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 2.4e-22 110.2 128 39.8
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 3.1e-22 109.8 101 57.4
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 4.0e-22 109.4 180 37.2
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 6.9e-22 108.6 173 35.8
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 9.0e-22 108.2 144 41.0
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 9.0e-22 108.2 194 36.1
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.5e-21 107.5 153 36.6
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 2.0e-21 107.1 149 36.9
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.0e-21 107.1 156 37.8
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 2.6e-21 106.7 156 37.2
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 2.6e-21 106.7 156 37.2
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.6e-21 106.7 152 35.5
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 3.4e-21 106.3 156 37.2
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.5e-21 105.9 172 36.6
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 4.5e-21 105.9 133 39.8
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 4.5e-21 105.9 151 35.8
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 5.8e-21 105.5 175 38.3
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 5.8e-21 105.5 128 39.1
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 7.6e-21 105.1 133 39.1
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.3e-20 104.4 70 70.0
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.3e-20 104.4 159 35.8
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.3e-20 104.4 154 35.7
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 4.9e-20 102.4 148 37.2
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.1e-19 101.3 120 40.0
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.1e-19 101.3 131 37.4
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.9e-19 100.5 184 33.7
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 4.2e-19 99.4 134 35.8
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 4.2e-19 99.4 134 35.8
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 5.4e-19 99.0 121 34.7
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.1e-18 97.1 159 33.3
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.7e-18 96.7 148 36.5
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 3.5e-18 96.3 88 62.5
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 3.5e-18 96.3 133 35.3
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 3.5e-18 96.3 133 35.3
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 4.6e-18 95.9 173 34.1
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 6.0e-18 95.5 133 35.3
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.9e-18 95.1 130 37.7
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 7.9e-18 95.1 133 35.3
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.8e-17 94.0 133 35.3
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.0e-17 93.2 132 34.8
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.0e-17 93.2 130 32.3
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 3.0e-17 93.2 174 35.1
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 6.7e-17 92.0 160 32.5
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 6.7e-17 92.0 179 33.5
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 6.7e-17 92.0 121 35.5
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.1e-16 91.3 129 34.9
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.1e-16 91.3 129 37.2
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.9e-16 90.5 129 34.9
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 4.3e-16 89.4 130 36.2
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 9.6e-16 88.2 154 33.1
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 9.6e-16 88.2 154 33.1
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.3e-15 87.8 130 35.4
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-15 87.8 135 39.3
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.6e-15 87.4 154 32.5
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.6e-15 87.4 154 32.5
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.6e-15 87.4 154 32.5
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 6.2e-15 85.5 136 33.8
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 8.1e-15 85.1 162 30.2
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 8.1e-15 85.1 95 36.8
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.4e-14 84.3 121 33.9
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.4e-14 83.6 139 33.1
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 2.4e-14 83.6 163 29.4
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.4e-14 83.6 149 33.6
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 5.3e-14 82.4 117 32.5
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 5.8e-13 79.0 153 32.7
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 3.8e-12 76.3 114 33.3
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 2.7e-10 70.1 92 34.8
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 2.7e-10 70.1 177 29.9
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.8e-09 67.4 117 32.5
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 2.3e-09 67.0 109 35.8
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 3.0e-09 66.6 80 35.0
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 8.7e-09 65.1 114 34.2
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 2.5e-08 63.5 80 33.8
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.8e-07 59.3 60 41.7


User provided reference genes

Program Settings