Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.7e-49 198.4 100 100.0
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 8.4e-27 123.6 98 63.3
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.9e-26 122.5 97 66.0
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.1e-24 114.4 85 74.1
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 1.3e-22 109.8 100 61.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 3.1e-21 105.1 98 59.2
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.2e-20 103.2 99 55.6
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 9.9e-20 100.1 99 61.6
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 8.4e-19 97.1 97 54.6
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 8.4e-19 97.1 98 57.1
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.4e-18 96.3 102 57.8
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 5.4e-18 94.4 98 50.0
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 9.3e-18 93.6 100 54.0
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 2.7e-17 92.0 100 54.0
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.0e-16 90.1 98 54.1
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 1.3e-16 89.7 97 55.7
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 1.8e-16 89.4 100 52.0
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 3.0e-16 88.6 99 50.5
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.7e-16 87.0 103 52.4
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 1.1e-15 86.7 95 51.6
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.5e-15 86.3 104 51.0
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 1.5e-15 86.3 121 48.8
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.9e-15 85.9 99 48.5
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.5e-15 85.5 98 50.0
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.3e-15 85.1 90 52.2
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 5.6e-15 84.3 98 46.9
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 5.6e-15 84.3 99 47.5
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 7.4e-15 84.0 97 48.5
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 9.6e-15 83.6 97 51.5
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 9.6e-15 83.6 93 52.7
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 9.6e-15 83.6 98 48.0
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.3e-14 83.2 116 46.6
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 1.6e-14 82.8 113 46.9
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.6e-14 82.8 98 49.0
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 2.1e-14 82.4 93 53.8
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.1e-14 82.4 98 49.0
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.8e-14 82.0 96 51.0
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.8e-14 82.0 92 54.3
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.7e-14 81.6 103 49.5
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.7e-14 81.6 108 50.9
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 4.8e-14 81.3 92 48.9
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 6.2e-14 80.9 101 53.5
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 8.1e-14 80.5 97 46.4
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.1e-13 80.1 90 52.2
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.4e-13 79.7 91 48.4
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.4e-13 79.7 110 48.2
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 1.8e-13 79.3 94 45.7
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 1.8e-13 79.3 103 48.5
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.4e-13 79.0 94 48.9
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 4.0e-13 78.2 94 45.7
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 5.3e-13 77.8 99 47.5
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 6.9e-13 77.4 98 54.1
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 9.0e-13 77.0 109 44.0
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 9.0e-13 77.0 98 45.9
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.5e-12 76.3 81 54.3
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 2.0e-12 75.9 102 50.0
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 3.4e-12 75.1 88 50.0
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.4e-12 75.1 92 52.2
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 4.5e-12 74.7 99 49.5
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 4.5e-12 74.7 86 52.3
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 7.6e-12 73.9 97 47.4
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 7.6e-12 73.9 87 47.1
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.0e-11 73.6 90 48.9
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.0e-11 73.6 99 46.5
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.3e-11 73.2 96 49.0
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 1.3e-11 73.2 111 42.3
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 1.3e-11 73.2 94 47.9
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 1.3e-11 73.2 90 50.0
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 1.3e-11 73.2 96 46.9
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.7e-11 72.8 101 48.5
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.7e-11 72.8 105 41.9
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.2e-11 72.4 106 41.5
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.9e-11 72.0 45 71.1
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 2.9e-11 72.0 98 43.9
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 4.9e-11 71.2 90 46.7
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 6.5e-11 70.9 115 47.0
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 1.1e-10 70.1 127 41.7
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 1.1e-10 70.1 91 46.2
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 1.1e-10 70.1 100 43.0
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 1.1e-10 70.1 95 45.3
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-10 69.7 91 45.1
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.9e-10 69.3 45 66.7
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.9e-10 69.3 45 66.7
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 1.9e-10 69.3 92 39.1
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.9e-10 69.3 88 47.7
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.5e-10 68.9 100 41.0
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 3.2e-10 68.6 100 41.0
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.2e-10 68.6 47 66.0
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 3.2e-10 68.6 91 46.2
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 4.2e-10 68.2 85 47.1
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.1e-10 67.4 91 44.0
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 7.1e-10 67.4 90 41.1
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 7.1e-10 67.4 98 39.8
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 9.3e-10 67.0 92 43.5
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 1.2e-09 66.6 97 42.3
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.2e-09 66.6 91 44.0
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.6e-09 66.2 95 43.2
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.1e-09 65.9 91 44.0
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 2.7e-09 65.5 92 42.4
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 3.5e-09 65.1 100 41.0
A02p16280 Brassica napus HOM05D010176 ORTHO05D012455 4.6e-09 64.7 92 44.6
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 6.0e-09 64.3 77 45.5
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 7.9e-09 63.9 88 45.5
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 7.9e-09 63.9 91 45.1
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 7.9e-09 63.9 92 47.8
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 7.9e-09 63.9 44 63.6
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 7.9e-09 63.9 103 38.8
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 1.0e-08 63.5 100 45.0
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.0e-08 63.5 90 43.3
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 1.3e-08 63.2 90 46.7
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 1.3e-08 63.2 109 41.3
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.3e-08 63.2 50 60.0
FAN17G0917 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.8e-08 62.8 93 44.1
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 1.8e-08 62.8 90 43.3
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 2.3e-08 62.4 87 46.0
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 2.3e-08 62.4 90 42.2
Thhalv10019352m.g Eutrema salsugineum HOM05D010176 ORTHO05D012455 3.0e-08 62.0 94 43.6
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 3.9e-08 61.6 62 51.6
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 3.9e-08 61.6 90 45.6
Sabra08G0145000 Salix brachista HOM05D004965 ORTHO05D004401 3.9e-08 61.6 79 53.2
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 3.9e-08 61.6 94 43.6
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 5.1e-08 61.2 81 45.7
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 6.7e-08 60.8 103 36.9
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 6.7e-08 60.8 103 36.9
CDE04G1822 Ceratophyllum demersum HOM05D004965 ORTHO05D004401 6.7e-08 60.8 88 44.3
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 6.7e-08 60.8 90 36.7
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 8.7e-08 60.5 44 68.2
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 8.7e-08 60.5 97 39.2
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 1.1e-07 60.1 88 42.0
BcaC08g45847 Brassica carinata HOM05D010176 ORTHO05D012455 1.5e-07 59.7 97 43.3
Migut.H00875 Erythranthe guttata HOM05D004965 ORTHO05D004401 1.5e-07 59.7 103 39.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.9e-07 59.3 98 38.8
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 1.9e-07 59.3 88 48.9
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 2.5e-07 58.9 91 42.9
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 2.5e-07 58.9 91 40.7
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 2.5e-07 58.9 91 40.7
Cpa.g.sc5.310 Carica papaya HOM05D004965 ORTHO05D004401 3.3e-07 58.5 83 48.2
Oeu011717.2 Olea europaea HOM05D004965 ORTHO05D004401 3.3e-07 58.5 86 38.4
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 3.3e-07 58.5 38 68.4
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 3.3e-07 58.5 38 68.4
A09p03680 Brassica napus HOM05D009946 ORTHO05D004401 4.3e-07 58.2 94 41.5
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 4.3e-07 58.2 43 62.8
Sc10g0004060 Simmondsia chinensis HOM05D004965 ORTHO05D004401 4.3e-07 58.2 106 35.8
Carub.0002s1667 Capsella rubella HOM05D010176 ORTHO05D012455 5.7e-07 57.8 105 42.9
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 5.7e-07 57.8 90 42.2
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 5.7e-07 57.8 92 40.2
C09p03880 Brassica napus HOM05D009946 ORTHO05D004401 7.4e-07 57.4 90 41.1
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 7.4e-07 57.4 90 42.2
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 7.4e-07 57.4 28 89.3
AL2G29210 Arabidopsis lyrata HOM05D010176 ORTHO05D012455 9.6e-07 57.0 94 43.6
BcaC08g46447 Brassica carinata HOM05D010176 ORTHO05D012455 1.3e-06 56.6 88 42.0
CARHR063070 Cardamine hirsuta HOM05D010176 ORTHO05D012455 1.3e-06 56.6 97 42.3
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 1.3e-06 56.6 91 38.5
TWI75G1371 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.3e-06 56.6 99 41.4
BcaC03g15148 Brassica carinata HOM05D010176 ORTHO05D012455 1.6e-06 56.2 93 40.9
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 1.6e-06 56.2 90 40.0
A07p36420 Brassica napus HOM05D010176 ORTHO05D012455 2.1e-06 55.8 88 42.0
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 2.1e-06 55.8 84 38.1
Solyc01g011105.1 Solanum lycopersicum HOM05D004965 ORTHO05D004401 2.1e-06 55.8 47 53.2
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 2.8e-06 55.5 43 67.4
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 2.8e-06 55.5 96 42.7
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 2.8e-06 55.5 37 73.0
BcaB03g15521 Brassica carinata HOM05D010176 ORTHO05D012455 3.7e-06 55.1 69 46.4
TWI36G1686 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 4.8e-06 54.7 114 39.5
Os03g0803200 Oryza sativa ssp. japonica HOM05D025658 ORTHO05D030375 6.2e-06 54.3 95 41.1
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 6.2e-06 54.3 91 39.6
BolC9t53314H Brassica oleracea HOM05D009946 ORTHO05D004401 8.2e-06 53.9 90 38.9
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 8.2e-06 53.9 106 36.8


User provided reference genes

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