Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 0.0e+00 2855.1 1415 100.0
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 0.0e+00 1562.4 1550 59.5
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 0.0e+00 1389.0 1543 54.8
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 8.2e-285 984.6 1554 43.8
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 5.7e-270 935.3 1526 42.5
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 4.1e-260 902.5 1599 41.3
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 4.1e-228 796.2 1443 40.6
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 3.3e-193 680.2 1520 37.4
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 1.2e-190 671.8 1465 38.1
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 8.4e-189 665.6 1502 37.1
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 1.9e-185 654.4 1512 36.6
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 9.6e-185 652.1 1451 37.6
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 9.6e-185 652.1 1315 39.1
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 4.3e-169 600.1 1238 38.3
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.4e-167 595.1 1375 36.5
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 2.1e-155 554.7 1430 33.8
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 3.9e-146 523.9 1422 34.3
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 4.0e-114 417.5 1367 32.3
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 1.2e-105 389.4 1339 31.1
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 5.4e-103 380.6 1390 30.4
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 7.0e-103 380.2 1341 31.7
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 2.7e-102 378.3 1440 31.0
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.8e-97 360.5 1330 31.3
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 7.5e-97 360.1 1310 30.3
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 8.3e-96 356.7 1335 30.9
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 1.1e-95 356.3 1343 29.8
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 2.3e-90 338.6 1400 29.9
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 8.9e-90 336.7 1319 29.9
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 5.8e-89 334.0 1054 29.7
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 5.8e-89 334.0 1369 30.5
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 9.9e-89 333.2 1380 30.3
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.7e-88 332.4 1385 30.3
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.9e-88 330.9 1380 30.1
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 8.3e-88 330.1 1364 30.3
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 1.4e-87 329.3 1316 28.8
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.2e-86 326.2 1380 30.2
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 1.2e-86 326.2 1411 28.6
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.0e-85 323.2 1266 29.9
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 1.7e-85 322.4 1227 31.3
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 6.2e-83 313.9 1312 29.3
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 1.2e-81 309.7 1335 29.7
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 2.6e-81 308.5 1399 27.9
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 2.2e-80 305.4 1404 27.6
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 8.4e-80 303.5 1309 28.7
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 3.2e-79 301.6 1545 28.7
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 7.8e-78 297.0 1301 29.2
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.0e-77 296.6 1335 29.0
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 1.5e-76 292.7 1368 28.9
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 1.6e-75 289.3 1146 29.9
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 1.6e-75 289.3 1146 29.9
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.8e-74 285.8 1282 28.9
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 3.1e-74 285.0 1373 27.5
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-73 283.1 1299 28.3
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 2.6e-73 282.0 1338 29.0
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 3.4e-73 281.6 1392 28.6
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.9e-72 278.5 1261 28.9
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 3.2e-71 275.0 1341 28.6
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 1.2e-70 273.1 1413 28.5
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.5e-68 266.2 1397 27.1
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 3.3e-68 265.0 1417 28.3
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 5.6e-68 264.2 1406 26.7
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 3.6e-67 261.5 1225 29.5
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 8.1e-67 260.4 1405 27.3
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.8e-66 259.2 1414 27.4
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 8.4e-64 250.4 1280 27.3
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.4e-63 249.6 1391 25.9
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 2.4e-63 248.8 1294 26.9
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 5.4e-63 247.7 1315 26.8
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 1.0e-61 243.4 1270 27.6
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 3.9e-61 241.5 1274 27.8
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 3.3e-60 238.4 1270 27.2
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.1e-58 233.4 1350 26.4
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 4.5e-57 228.0 1336 27.8
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 2.5e-55 222.2 1191 28.1
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 2.5e-55 222.2 1191 28.1
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 7.1e-55 220.7 1416 25.9
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 7.1e-55 220.7 1368 26.7
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 4.6e-54 218.0 1382 26.3
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.0e-53 216.9 427 38.4
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 4.5e-49 201.4 1287 26.2
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 4.2e-47 194.9 1525 25.8
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 7.1e-47 194.1 1305 26.1
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 6.1e-46 191.0 1241 26.3
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 5.1e-45 188.0 1267 25.2
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 2.5e-44 185.7 680 30.1
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 9.7e-44 183.7 1208 25.0
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 2.2e-43 182.6 557 32.3
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 8.2e-43 180.6 1247 27.0
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 1.5e-41 176.4 1204 25.8
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 8.5e-40 170.6 639 31.0
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.1e-39 170.2 1242 26.6
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 1.0e-37 163.7 1501 24.7
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.9e-37 161.8 307 39.4
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 5.1e-37 161.4 229 45.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 5.3e-34 151.4 802 27.2
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 1.5e-33 149.8 1341 23.0
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.7e-32 146.4 463 33.9
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.5e-31 142.5 1226 24.6
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 9.4e-31 140.6 1200 25.6
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 2.7e-30 139.0 1278 24.6
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 3.6e-30 138.7 1210 25.4
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 5.1e-29 134.8 799 27.2
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 6.7e-29 134.4 337 36.8
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 8.2e-27 127.5 520 31.5
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.8e-26 126.3 757 28.0
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 9.1e-26 124.0 782 28.0
CDE07G1099 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.5e-25 123.2 511 31.1
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 8.5e-24 117.5 1153 24.1
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 3.2e-23 115.5 1408 23.2
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.2e-22 113.6 783 26.2
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 6.1e-22 111.3 1542 23.3
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 3.9e-21 108.6 750 26.5
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 4.4e-20 105.1 1139 24.5
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 1.7e-19 103.2 461 29.5
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.2e-19 102.8 1124 24.7
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.1e-18 100.5 513 30.4
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.1e-18 100.5 784 26.1
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 1.4e-18 100.1 495 28.3
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.8e-18 99.8 495 28.1
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.4e-18 99.4 794 25.9
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 3.1e-18 99.0 551 26.7
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.1e-18 97.4 1153 23.9
HanXRQChr17g0533291 Helianthus annuus HOM05D006627 ORTHO05D007753 3.5e-17 95.5 1066 24.7
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 4.5e-17 95.1 1307 23.7
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.3e-16 93.6 1088 24.5
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.2e-16 92.8 525 26.5
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 3.8e-16 92.0 1541 23.6
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 3.8e-16 92.0 443 28.7
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 6.5e-16 91.3 1106 24.2
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 1.1e-15 90.5 1516 23.2
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 2.5e-15 89.4 556 28.2
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-14 86.7 269 35.3
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.6e-14 86.7 496 28.8
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 2.1e-14 86.3 742 26.1
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 2.1e-14 86.3 760 25.4
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 2.7e-14 85.9 140 42.1
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.7e-14 85.9 270 35.2
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 3.6e-14 85.5 439 28.5
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 8.0e-14 84.3 1126 23.7
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.4e-13 83.6 776 24.9
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 3.0e-13 82.4 1287 23.7
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 3.0e-13 82.4 451 27.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.0e-13 82.0 750 27.1
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 6.8e-13 81.3 1355 22.4
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 8.8e-13 80.9 780 25.9
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 8.8e-13 80.9 1161 22.0
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.2e-12 80.5 390 28.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.5e-12 80.1 451 27.3
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.0e-12 79.7 451 26.8
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 5.7e-12 78.2 279 33.0
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 7.5e-12 77.8 283 33.2
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.7e-11 76.6 279 32.6
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 2.8e-11 75.9 1140 24.0
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.8e-11 75.1 1087 23.7
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.1e-10 72.4 758 26.0
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 3.1e-10 72.4 1297 23.3
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 4.1e-10 72.0 287 30.7
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 3.5e-09 68.9 241 28.6
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 5.9e-09 68.2 784 25.9
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 3.8e-08 65.5 1325 22.3
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.1e-07 63.9 1096 22.3
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.5e-07 63.5 421 27.6
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.5e-07 63.5 355 26.2
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.9e-07 63.2 766 24.3
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 5.5e-07 61.6 338 26.9
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 9.4e-07 60.8 1169 24.0
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.1e-06 59.7 386 26.4
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 3.6e-06 58.9 307 24.8
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 3.6e-06 58.9 372 25.8
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 8.0e-06 57.8 315 25.7


User provided reference genes

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