Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.5e-286 988.0 488 100.0
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.7e-272 940.6 488 94.3
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.1e-272 940.3 488 94.1
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.7e-271 936.8 487 93.6
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.8e-269 930.6 486 93.0
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.3e-268 927.2 486 92.0
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 1.2e-267 926.0 483 93.2
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.5e-267 925.6 486 90.9
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.5e-267 925.6 486 92.2
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.0e-267 925.2 486 92.2
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 2.0e-267 925.2 488 92.0
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.6e-267 924.9 486 92.0
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 2.6e-267 924.9 486 92.4
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 3.5e-267 924.5 484 92.8
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 4.5e-267 924.1 486 92.2
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 7.7e-267 923.3 486 91.6
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 7.7e-267 923.3 489 92.4
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.0e-266 922.9 486 92.6
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.0e-266 922.9 486 92.4
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.3e-266 922.5 486 91.8
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.3e-266 922.5 486 92.0
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 2.9e-266 921.4 488 91.8
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 2.9e-266 921.4 486 92.4
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 5.0e-266 920.6 483 92.5
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.0e-266 920.6 486 91.6
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 8.5e-266 919.8 489 92.2
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.1e-265 919.5 481 92.5
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.5e-265 919.1 484 92.1
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.9e-265 918.7 486 92.4
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 1.9e-265 918.7 488 91.0
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.5e-265 918.3 486 91.6
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 2.5e-265 918.3 488 91.8
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.2e-265 917.9 486 92.2
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 7.2e-265 916.8 486 90.5
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 7.2e-265 916.8 488 92.0
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 9.4e-265 916.4 486 91.6
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 9.4e-265 916.4 486 92.0
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.2e-264 916.0 483 91.3
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 2.1e-264 915.2 486 91.2
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 2.7e-264 914.8 486 91.6
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 4.7e-264 914.1 491 90.8
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 4.7e-264 914.1 486 92.6
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 4.7e-264 914.1 484 91.5
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 1.0e-263 912.9 488 90.0
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 1.0e-263 912.9 488 90.0
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.4e-263 912.5 483 91.5
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.4e-263 912.5 486 90.9
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.4e-263 912.5 486 89.9
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.8e-263 912.1 486 90.5
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.8e-263 912.1 480 92.3
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 5.2e-263 910.6 484 91.5
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 5.2e-263 910.6 486 90.7
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 5.2e-263 910.6 486 89.9
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 5.2e-263 910.6 488 90.0
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 6.7e-263 910.2 480 93.1
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.1e-262 909.4 486 90.5
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.1e-262 909.4 486 90.3
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 1.1e-262 909.4 486 90.3
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.1e-262 909.4 486 91.4
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 3.3e-262 907.9 486 91.6
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 7.4e-262 906.7 486 91.4
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 7.4e-262 906.7 482 90.9
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 7.4e-262 906.7 480 91.5
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 9.7e-262 906.4 483 90.9
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.7e-261 905.6 484 90.5
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.7e-261 905.6 480 90.6
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 2.8e-261 904.8 486 90.9
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 2.8e-261 904.8 483 90.1
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 3.7e-261 904.4 485 90.3
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 4.8e-261 904.0 484 90.9
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 6.3e-261 903.7 486 90.7
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 8.2e-261 903.3 488 91.0
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 8.2e-261 903.3 482 91.1
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 8.2e-261 903.3 486 90.9
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 8.2e-261 903.3 480 90.8
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 1.4e-260 902.5 486 90.7
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.4e-260 902.5 486 89.7
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.8e-260 902.1 480 91.0
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.1e-260 901.4 473 92.2
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 4.1e-260 901.0 484 91.1
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 4.1e-260 901.0 486 89.7
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 5.3e-260 900.6 484 91.1
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 5.3e-260 900.6 472 93.2
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 7.0e-260 900.2 486 90.7
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 7.0e-260 900.2 486 90.9
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 7.0e-260 900.2 486 90.5
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 9.1e-260 899.8 480 90.6
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.6e-259 899.0 486 90.9
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.0e-259 898.7 486 90.9
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 2.6e-259 898.3 488 90.6
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.5e-259 897.9 488 90.2
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 5.9e-259 897.1 488 89.5
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.3e-258 896.0 487 89.3
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.3e-258 896.0 488 89.3
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.7e-258 895.6 480 90.4
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 2.2e-258 895.2 484 90.9
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.9e-258 894.8 484 90.9
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 5.0e-258 894.0 481 90.2
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 5.0e-258 894.0 479 91.4
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 5.0e-258 894.0 489 90.8
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.1e-257 892.9 483 90.7
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.1e-257 892.9 480 89.8
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 1.9e-257 892.1 459 95.2
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 2.5e-257 891.7 459 95.2
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 5.5e-257 890.6 462 95.0
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 5.2e-255 884.0 483 89.6
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 2.0e-254 882.1 436 95.4
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 2.9e-250 868.2 460 91.5
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 5.2e-247 857.4 436 92.9
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 8.8e-247 856.7 437 93.1
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 5.7e-246 854.0 478 84.1
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 9.8e-246 853.2 437 92.9
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 3.7e-245 851.3 437 92.0
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 2.0e-243 845.5 497 84.9
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.2e-240 836.3 407 96.6
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 1.2e-240 836.3 432 90.0
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 6.1e-240 833.9 407 96.3
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 2.2e-237 825.5 431 88.2
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.9e-237 824.3 405 95.6
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 4.9e-237 824.3 409 94.4
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.8e-236 822.4 404 95.5
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.1e-233 813.1 487 83.2
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 3.2e-228 795.0 429 86.5
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 1.0e-226 790.0 386 97.4
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 4.1e-220 768.1 421 83.4
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 2.1e-219 765.8 435 81.8
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 1.3e-218 763.1 427 82.2
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 5.8e-214 747.7 392 91.8
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 8.6e-210 733.8 480 78.8
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 7.3e-209 730.7 393 90.8
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 7.4e-193 677.6 346 93.4
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 7.6e-190 667.5 369 88.1
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.6e-184 649.8 395 74.4
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.8e-182 641.3 486 70.2
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.2e-181 639.4 317 95.9
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.6e-174 614.4 486 68.1
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.9e-173 612.5 486 67.9
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.3e-170 603.6 486 67.3
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 9.7e-169 597.4 331 89.4
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.0e-149 534.3 279 90.3
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.9e-141 506.1 351 73.2
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.3e-125 454.1 292 72.3
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.0e-117 426.4 203 99.0
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.6e-99 366.3 180 92.8
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.6e-97 360.1 222 79.3
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.4e-95 353.6 174 97.1
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 7.3e-92 342.0 170 94.7
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.8e-83 312.8 486 41.8
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.1e-76 291.6 146 94.5
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 7.9e-70 268.9 164 86.0
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 3.0e-69 266.9 146 87.0
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 7.6e-65 252.3 129 93.8
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 3.2e-63 246.9 127 87.4
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 5.7e-60 236.1 147 85.7
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 4.6e-54 216.5 259 44.4
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 3.3e-52 210.3 100 96.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.3e-51 208.4 102 96.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.2e-47 193.7 127 77.2
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 9.7e-36 155.6 102 76.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 8.2e-35 152.5 76 94.7
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 8.2e-35 152.5 76 94.7
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.5e-33 146.7 108 68.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 6.7e-29 132.9 197 38.1
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 8.8e-29 132.5 68 94.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.6e-28 131.0 70 88.6
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-27 126.7 65 92.3
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-27 126.7 65 92.3
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-26 125.6 67 88.1
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.5e-25 120.2 65 86.2
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.0e-24 119.0 65 84.6
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.6e-22 110.5 83 66.3
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 4.0e-21 107.1 67 73.1
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 6.8e-21 106.3 67 71.6
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 9.5e-15 85.9 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 1.8e-13 81.6 71 57.7
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 6.8e-13 79.7 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.5e-12 78.6 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 7.0e-10 69.7 61 59.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 4.7e-06 57.0 40 65.0
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.7e-06 57.0 60 63.3


User provided reference genes

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