Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 4.5e-214 747.7 378 100.0
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 6.8e-154 547.7 334 79.9
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 1.7e-149 533.1 334 81.4
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 4.7e-147 525.0 339 77.0
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.8e-146 523.1 355 73.5
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 3.1e-146 522.3 334 78.7
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 3.1e-146 522.3 334 77.5
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 8.9e-146 520.8 335 75.8
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 1.2e-145 520.4 334 76.9
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 1.5e-145 520.0 331 76.1
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 3.4e-145 518.8 335 75.8
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 4.4e-145 518.5 346 75.7
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 5.8e-145 518.1 371 70.4
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 5.8e-145 518.1 307 86.0
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 1.3e-144 516.9 335 77.9
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 2.9e-144 515.8 330 78.2
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 2.9e-144 515.8 334 77.8
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.3e-144 514.2 334 77.2
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.3e-144 514.2 334 77.2
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 8.3e-144 514.2 334 77.2
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 1.9e-143 513.1 334 76.9
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.9e-143 513.1 330 77.9
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.2e-143 512.3 334 77.8
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 1.2e-142 510.4 346 75.4
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 1.2e-142 510.4 334 75.4
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 1.6e-142 510.0 332 77.1
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 3.5e-142 508.8 362 71.5
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 4.6e-142 508.4 335 74.6
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 3.0e-141 505.8 330 76.7
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 3.0e-141 505.8 334 76.3
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 3.9e-141 505.4 334 74.9
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.1e-141 505.0 334 76.9
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 5.1e-141 505.0 330 77.0
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.5e-140 502.7 330 76.4
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 5.6e-140 501.5 330 77.0
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 1.2e-139 500.4 334 75.1
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 2.1e-139 499.6 340 74.7
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 2.1e-139 499.6 341 75.1
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 3.6e-139 498.8 334 75.7
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 3.6e-139 498.8 335 74.0
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 4.7e-139 498.4 335 74.6
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 5.2e-138 495.0 335 74.0
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 4.4e-137 491.9 334 73.7
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 4.4e-137 491.9 334 73.1
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 4.4e-137 491.9 307 78.2
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 3.8e-136 488.8 334 72.5
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 6.4e-136 488.0 329 73.3
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 6.4e-136 488.0 334 72.2
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 8.4e-136 487.6 315 76.8
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 5.4e-135 485.0 334 71.9
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 5.4e-135 485.0 334 72.8
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 5.4e-135 485.0 334 71.3
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 1.2e-134 483.8 331 72.2
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 2.7e-134 482.6 330 72.4
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 7.8e-134 481.1 336 69.3
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 5.1e-133 478.4 331 70.1
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 5.1e-133 478.4 330 74.2
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 8.6e-133 477.6 350 68.0
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 1.5e-132 476.9 331 72.2
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 2.5e-132 476.1 329 72.9
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 3.3e-132 475.7 338 72.8
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 9.6e-132 474.2 330 70.3
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 1.2e-131 473.8 332 71.7
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 1.2e-131 473.8 332 71.7
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 2.1e-131 473.0 342 67.8
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 2.8e-131 472.6 335 70.1
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 1.1e-130 470.7 323 71.2
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 1.8e-130 469.9 426 60.8
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 4.0e-130 468.8 332 70.8
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 4.0e-130 468.8 332 70.8
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 4.0e-130 468.8 330 68.8
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 5.2e-130 468.4 335 69.9
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 7.6e-129 464.5 363 65.8
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 9.9e-129 464.2 345 68.1
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 4.9e-128 461.8 321 71.7
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 4.6e-126 455.3 334 69.2
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 3.0e-125 452.6 333 68.5
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 1.7e-120 436.8 331 67.1
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 2.2e-120 436.4 296 72.6
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 4.9e-120 435.3 341 67.4
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 6.4e-120 434.9 292 73.6
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 3.9e-117 425.6 323 65.3
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 6.9e-114 414.8 346 63.6
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 4.5e-113 412.1 334 64.1
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 4.2e-111 405.6 368 58.7
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 3.0e-109 399.4 362 54.7
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 2.6e-105 386.3 321 57.0
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 1.0e-104 384.4 258 72.1
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 4.9e-104 382.1 249 76.3
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 7.9e-102 374.8 321 59.2
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.8e-101 373.6 334 58.4
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 3.9e-101 372.5 237 77.2
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 2.5e-100 369.8 343 59.2
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.8e-99 365.5 237 78.1
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 2.5e-95 353.2 335 57.3
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 1.5e-92 344.0 233 72.1
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.8e-90 337.0 311 54.3
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 6.9e-90 335.1 389 51.9
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 3.6e-86 322.8 333 55.3
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 8.8e-85 318.2 234 67.1
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 4.1e-82 309.3 287 60.6
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 4.1e-82 309.3 362 50.8
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 1.9e-79 300.4 307 53.1
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.2e-77 292.4 202 75.2
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 3.1e-74 283.1 310 52.6
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.2e-70 271.2 827 29.3
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.5e-63 247.7 202 65.8
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 3.6e-62 243.0 362 41.7
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 1.0e-53 214.9 135 75.6
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 2.3e-48 197.2 169 62.1
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 8.6e-48 195.3 136 66.9
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 8.0e-46 188.7 312 39.4
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 3.6e-38 163.3 122 67.2
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 1.3e-24 118.2 67 76.1
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 3.0e-24 117.1 76 73.7
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 2.0e-20 104.4 83 67.5
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.5e-15 88.2 64 65.6
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 1.2e-14 85.1 43 88.4
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.1e-14 84.3 105 45.7
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 6.4e-11 72.8 57 59.6
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 1.9e-10 71.2 49 71.4
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 4.2e-10 70.1 263 28.1
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 9.3e-10 68.9 245 26.9
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 9.3e-10 68.9 245 26.9
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.6e-09 68.2 263 27.8
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.6e-09 68.2 283 26.5
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 2.1e-09 67.8 282 26.2
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 1.3e-08 65.1 230 26.5
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 1.3e-08 65.1 260 26.2
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 1.7e-08 64.7 230 26.1
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 1.7e-08 64.7 230 26.1
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 3.9e-08 63.5 211 28.0
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 3.9e-08 63.5 209 28.2
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 3.9e-08 63.5 260 23.5
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 5.1e-08 63.2 258 26.0
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 1.5e-07 61.6 228 25.9
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-07 61.2 105 32.4
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-07 61.2 105 32.4
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-07 61.2 105 32.4
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 1.9e-07 61.2 247 25.9
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.9e-07 61.2 227 27.3
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 2.5e-07 60.8 296 24.3
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 2.5e-07 60.8 231 26.0
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 3.3e-07 60.5 238 27.3
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 3.3e-07 60.5 210 26.2
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 4.3e-07 60.1 215 27.9
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 5.6e-07 59.7 266 25.2
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 7.3e-07 59.3 226 25.7
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 7.3e-07 59.3 214 27.1
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 9.6e-07 58.9 267 24.7
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 1.3e-06 58.5 198 30.3
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.3e-06 58.5 229 27.5
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.6e-06 58.2 221 24.9
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 2.1e-06 57.8 234 23.9
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 2.1e-06 57.8 249 25.7
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 2.1e-06 57.8 215 27.9
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 3.6e-06 57.0 228 25.0
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 4.8e-06 56.6 217 28.1


User provided reference genes

Program Settings