Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.7e-64 249.2 125 100.0
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 4.4e-41 171.4 128 68.8
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.4e-39 166.4 125 66.4
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 1.0e-37 160.2 125 66.4
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 3.8e-37 158.3 136 61.8
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 8.6e-37 157.1 121 64.5
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.6e-35 152.9 129 63.6
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.6e-35 152.9 123 65.9
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 2.1e-35 152.5 128 64.8
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 6.1e-35 151.0 125 60.8
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 8.0e-35 150.6 124 61.3
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 8.0e-35 150.6 122 63.9
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.0e-34 150.2 123 62.6
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.4e-34 149.8 125 63.2
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 3.0e-34 148.7 126 66.7
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 4.0e-34 148.3 124 59.7
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 4.0e-34 148.3 128 64.8
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 5.2e-34 147.9 125 62.4
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 8.9e-34 147.1 124 60.5
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 8.9e-34 147.1 124 59.7
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 1.2e-33 146.7 124 61.3
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.0e-33 146.0 125 62.4
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.0e-33 146.0 124 58.9
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 2.6e-33 145.6 124 59.7
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.6e-33 145.6 125 62.4
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 2.6e-33 145.6 125 58.4
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 4.4e-33 144.8 124 58.9
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 4.4e-33 144.8 127 59.1
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.7e-33 144.4 125 62.4
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.5e-33 144.1 125 61.6
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 9.8e-33 143.7 125 59.2
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 9.8e-33 143.7 128 63.3
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 9.8e-33 143.7 124 63.7
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.3e-32 143.3 124 60.5
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.3e-32 143.3 123 63.4
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.7e-32 142.9 123 61.8
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.7e-32 142.9 125 59.2
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.2e-32 142.5 127 58.3
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 2.2e-32 142.5 121 58.7
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 2.8e-32 142.1 124 58.9
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 2.8e-32 142.1 124 59.7
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.8e-32 142.1 124 58.9
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.7e-32 141.7 124 60.5
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.7e-32 141.7 124 60.5
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 3.7e-32 141.7 124 61.3
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 8.3e-32 140.6 123 61.8
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.1e-31 140.2 124 58.9
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.4e-31 139.8 120 61.7
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.8e-31 139.4 124 58.9
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 1.8e-31 139.4 128 58.6
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 4.1e-31 138.3 120 56.7
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 4.1e-31 138.3 125 58.4
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 5.4e-31 137.9 90 72.2
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 5.4e-31 137.9 124 60.5
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.2e-30 136.7 120 61.7
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 1.6e-30 136.3 124 58.9
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 2.0e-30 136.0 124 57.3
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.5e-30 134.8 123 61.8
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 4.5e-30 134.8 125 57.6
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 7.8e-30 134.0 120 57.5
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 1.0e-29 133.7 124 56.5
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.0e-29 133.7 124 55.6
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.0e-29 133.7 124 55.6
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 1.3e-29 133.3 132 58.3
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.3e-29 133.3 131 57.3
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.3e-29 133.3 144 53.5
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.7e-29 132.9 127 59.1
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.3e-29 132.5 123 60.2
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.0e-29 131.3 123 61.0
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 6.6e-29 131.0 121 55.4
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.5e-28 129.8 124 54.8
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.5e-28 129.8 121 59.5
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.5e-28 129.8 123 55.3
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 3.3e-28 128.6 120 56.7
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 4.3e-28 128.3 129 56.6
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 5.6e-28 127.9 124 58.1
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.2e-27 126.7 124 53.2
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.6e-27 126.3 125 57.6
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 3.6e-27 125.2 120 55.0
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 4.7e-27 124.8 121 56.2
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 6.1e-27 124.4 126 54.8
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 6.1e-27 124.4 138 54.3
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 6.1e-27 124.4 134 56.0
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 1.4e-26 123.2 122 56.6
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.4e-26 123.2 120 52.5
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 2.3e-26 122.5 124 54.8
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 3.0e-26 122.1 124 54.8
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 4.0e-26 121.7 120 51.7
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 4.0e-26 121.7 121 52.9
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 4.0e-26 121.7 134 49.3
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 5.2e-26 121.3 127 54.3
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 5.2e-26 121.3 121 55.4
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 6.8e-26 120.9 122 54.1
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 8.9e-26 120.6 122 55.7
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 2.0e-25 119.4 126 52.4
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 2.6e-25 119.0 132 53.8
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 4.4e-25 118.2 132 55.3
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 7.5e-25 117.5 121 56.2
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 1.3e-24 116.7 130 53.1
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 3.7e-24 115.2 124 52.4
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 4.9e-24 114.8 120 50.8
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.9e-24 114.8 124 50.0
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 8.3e-24 114.0 118 55.1
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.2e-23 112.1 120 45.8
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 7.0e-23 110.9 124 50.8
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 3.5e-22 108.6 128 50.8
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 7.8e-22 107.5 120 45.0
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.9e-21 105.1 125 50.4
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 8.6e-21 104.0 132 43.2
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.9e-20 102.8 126 46.8
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 4.3e-20 101.7 125 44.8
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 4.3e-20 101.7 121 47.1
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 5.6e-20 101.3 108 50.9
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.6e-19 99.8 134 44.0
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 4.7e-19 98.2 122 47.5
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.7e-19 98.2 136 40.4
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 6.8e-18 94.4 113 45.1
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.2e-17 93.6 120 45.0
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 2.6e-17 92.4 135 41.5
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 4.4e-17 91.7 123 44.7
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 2.4e-15 85.9 128 35.9
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 4.1e-15 85.1 115 39.1
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.6e-14 83.2 56 66.1
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 3.9e-13 78.6 120 39.2
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 6.6e-13 77.8 100 39.0
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 1.9e-12 76.3 135 36.3
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 1.9e-12 76.3 105 37.1
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 2.5e-12 75.9 89 41.6
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.3e-12 75.5 82 39.0
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.5e-12 73.9 46 65.2
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.2e-11 73.6 98 41.8
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.1e-11 72.8 117 34.2
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.4e-10 70.1 89 50.6
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 3.1e-10 68.9 95 38.9
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 5.2e-10 68.2 59 49.2
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.6e-09 65.9 62 43.5
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 4.4e-09 65.1 82 40.2
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 4.9e-08 61.6 118 35.6
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.1e-07 60.5 89 43.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 4.1e-07 58.5 49 49.0
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 4.6e-06 55.1 124 28.2


User provided reference genes

Program Settings