Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1103 Trochodendron aralioides HOM05D006217 ORTHO05D008480 4.3e-95 351.3 172 100.0
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 8.2e-30 134.4 91 72.5
Actinidia04949 Actinidia chinensis HOM05D006217 ORTHO05D008480 5.9e-28 128.3 91 69.2
CSS0026115 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 5.9e-28 128.3 91 69.2
CSS0050348 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 5.9e-28 128.3 91 69.2
Atru.BG.200.p Acer truncatum HOM05D006217 ORTHO05D008480 3.8e-27 125.6 91 70.3
CSS0020542 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 8.5e-27 124.4 86 70.9
MD06G1183200 Malus domestica HOM05D006217 ORTHO05D008480 2.5e-26 122.9 91 67.0
Cc04_g16120 Coffea canephora HOM05D006217 ORTHO05D008480 2.7e-25 119.4 95 62.1
Eucgr.K02896 Eucalyptus grandis HOM05D006217 ORTHO05D008480 2.7e-25 119.4 90 66.7
DCAR_016511 Daucus carota HOM05D006217 ORTHO05D008480 2.3e-24 116.3 91 62.6
Sc12g0005700 Simmondsia chinensis HOM05D006217 ORTHO05D008480 2.3e-24 116.3 91 63.7
Prupe.5G181900 Prunus persica HOM05D006217 ORTHO05D008480 3.9e-24 115.5 91 63.7
Aqoxy3G03170 Aquilegia oxysepala HOM05D006217 ORTHO05D008480 5.1e-24 115.2 89 60.7
Lj9C455T7 Lonicera japonica HOM05D006217 ORTHO05D008480 8.7e-24 114.4 90 64.4
FvH4_5g16180 Fragaria vesca HOM05D006217 ORTHO05D008480 1.5e-23 113.6 91 62.6
RcHm_v2.0_Chr7g0179951 Rosa chinensis HOM05D006217 ORTHO05D008480 1.5e-23 113.6 91 62.6
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 3.3e-23 112.5 91 63.7
Ah.11g046350 Amaranthus hybridus HOM05D006217 ORTHO05D008480 4.3e-23 112.1 89 62.9
Hma1.2p1_0572F.1_g181080 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 7.4e-23 111.3 69 76.8
MELO3C002229.2 Cucumis melo HOM05D006217 ORTHO05D008480 1.1e-21 107.5 91 61.5
Hund02699 Selenicereus undatus HOM05D006217 ORTHO05D008480 1.3e-19 100.5 63 73.0
Thecc.03G001400 Theobroma cacao HOM05D006217 ORTHO05D008480 2.2e-19 99.8 55 83.6
FAN08G1390 Fragaria x ananassa HOM05D006217 ORTHO05D008480 5.0e-19 98.6 70 68.6
FAN13G2523 Fragaria x ananassa HOM05D006217 ORTHO05D008480 5.0e-19 98.6 70 68.6
FAN18G2370 Fragaria x ananassa HOM05D006217 ORTHO05D008480 5.0e-19 98.6 70 68.6
FAN04G0516 Fragaria x ananassa HOM05D006217 ORTHO05D008480 6.5e-19 98.2 70 67.1
CARHR068170 Cardamine hirsuta HOM05D006217 ORTHO05D008480 1.0e-16 90.9 66 65.2
Sed0017741 Sechium edule HOM05D006217 ORTHO05D011532 2.6e-15 86.3 75 60.0
BcaC08g46912 Brassica carinata HOM05D006217 ORTHO05D008480 8.2e-14 81.3 95 45.3
MD14G1189200 Malus domestica HOM05D006217 ORTHO05D008480 8.2e-14 81.3 61 63.9
Manes.06G099200 Manihot esculenta HOM05D006217 ORTHO05D008480 3.8e-11 72.4 55 60.0
Ca_21873_v3 Cicer arietinum L. HOM05D006217 ORTHO05D008480 8.5e-11 71.2 59 61.0
TPR.G38418 Trifolium pratense HOM05D006217 ORTHO05D008480 1.1e-10 70.9 58 56.9
Lalb_Chr12g0201281 Lupinus albus HOM05D006217 ORTHO05D008480 2.7e-09 66.2 56 57.1
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 2.7e-09 66.2 90 35.6
CAN.G853.39 Capsicum annuum HOM05D006217 ORTHO05D008480 8.0e-09 64.7 55 54.5
PGR044G0185 Punica granatum HOM05D006217 ORTHO05D008480 1.0e-08 64.3 55 56.4
GSVIVG01007844001 Vitis vinifera HOM05D006217 ORTHO05D008480 1.0e-08 64.3 49 61.2
Solyc03g113630.3 Solanum lycopersicum HOM05D006217 ORTHO05D008480 1.8e-08 63.5 53 56.6
Sopen03g032670 Solanum pennellii HOM05D006217 ORTHO05D008480 1.8e-08 63.5 53 56.6
PGSC0003DMG400024573 Solanum tuberosum HOM05D006217 ORTHO05D008480 1.8e-08 63.5 53 56.6
Hma1.2p1_0572F.1_g181090 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 3.9e-08 62.4 47 63.8
Ciclev10018817m.g Citrus clementina HOM05D006217 ORTHO05D008480 5.2e-08 62.0 45 66.7
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 8.8e-08 61.2 90 35.6
Gorai.008G298300 Gossypium raimondii HOM05D006217 ORTHO05D008480 1.5e-07 60.5 51 56.9
CsaV3_1G008120 Cucumis sativus L. HOM05D006217 ORTHO05D008480 2.0e-07 60.1 49 59.2
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.3e-06 57.4 135 25.9
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.3e-06 57.4 135 25.9
SMO353G0114 Selaginella moellendorffii HOM05D006217 ORTHO05D008480 1.7e-06 57.0 94 34.0
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 2.8e-06 56.2 128 25.8
AUR62008306 Chenopodium quinoa HOM05D006217 ORTHO05D008480 3.7e-06 55.8 46 58.7
ECA233G6190 Erigeron canadensis HOM05D007145 ORTHO05D008952 3.7e-06 55.8 149 25.5
vmacro19344 Vaccinium macrocarpon HOM05D006217 ORTHO05D008480 4.8e-06 55.5 44 61.4


User provided reference genes

Program Settings