Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 9.2e-90 333.6 173 100.0
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 4.9e-67 258.1 168 80.4
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 8.7e-64 247.3 163 76.7
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 2.5e-63 245.7 167 74.3
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 3.7e-62 241.9 156 78.8
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.4e-61 240.0 166 72.9
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 5.3e-61 238.0 164 76.8
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.0e-60 236.1 163 73.6
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 5.8e-60 234.6 172 73.8
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 7.6e-60 234.2 173 69.9
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 7.6e-60 234.2 164 71.3
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 1.0e-59 233.8 166 68.1
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.2e-59 232.6 172 70.3
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 2.2e-59 232.6 172 72.7
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 2.2e-59 232.6 169 74.0
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 2.9e-59 232.3 172 72.1
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 4.9e-59 231.5 156 70.5
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 4.9e-59 231.5 160 70.6
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 1.4e-58 229.9 173 68.8
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 4.2e-58 228.4 166 68.1
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 5.5e-58 228.0 172 69.8
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 9.3e-58 227.3 167 68.9
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 1.2e-57 226.9 160 71.2
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.2e-57 226.9 160 71.2
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 1.2e-57 226.9 160 71.2
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.2e-57 226.9 169 68.0
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.1e-57 226.1 167 70.1
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 2.7e-57 225.7 164 70.7
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 2.7e-57 225.7 169 67.5
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 3.5e-57 225.3 160 70.0
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 6.0e-57 224.6 170 69.4
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 6.0e-57 224.6 167 68.3
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.0e-56 223.8 163 69.3
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 1.8e-56 223.0 156 71.2
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 2.3e-56 222.6 168 67.3
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 2.3e-56 222.6 155 69.7
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 2.3e-56 222.6 162 72.2
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 3.0e-56 222.2 161 65.8
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 6.7e-56 221.1 166 64.5
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 8.7e-56 220.7 173 67.6
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 8.7e-56 220.7 164 65.9
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 1.5e-55 219.9 152 72.4
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.5e-55 219.9 166 66.3
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 2.5e-55 219.2 155 71.0
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 4.3e-55 218.4 168 65.5
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 4.3e-55 218.4 166 65.1
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 9.6e-55 217.2 167 67.7
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.3e-54 216.9 161 64.6
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.6e-54 216.5 154 69.5
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.6e-54 216.5 154 69.5
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.6e-54 216.5 159 64.8
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 2.1e-54 216.1 156 65.4
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.1e-54 216.1 169 66.9
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.8e-54 215.7 168 69.0
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 2.8e-54 215.7 161 64.0
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 3.7e-54 215.3 152 70.4
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.1e-53 213.8 154 68.8
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.8e-53 213.0 162 64.2
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.8e-53 213.0 159 66.0
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 3.1e-53 212.2 168 68.5
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 3.1e-53 212.2 161 62.7
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 9.0e-53 210.7 161 62.7
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 9.0e-53 210.7 156 64.7
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 9.0e-53 210.7 167 60.5
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 1.2e-52 210.3 156 64.7
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 1.2e-52 210.3 156 64.7
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 1.2e-52 210.3 156 64.7
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 1.2e-52 210.3 156 64.7
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 2.6e-52 209.1 168 64.3
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.0e-51 207.2 172 65.1
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.0e-51 207.2 172 65.1
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.2e-51 206.1 172 65.1
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 2.2e-51 206.1 170 65.3
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 3.8e-51 205.3 172 64.5
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 5.0e-51 204.9 154 64.3
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 5.0e-51 204.9 161 61.5
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 5.0e-51 204.9 161 61.5
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.4e-50 203.4 164 62.8
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.9e-50 203.0 169 59.8
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 1.9e-50 203.0 154 66.9
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 5.5e-50 201.4 155 65.2
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.2e-49 200.3 163 66.3
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.6e-49 199.9 159 61.0
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 2.1e-49 199.5 137 70.1
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 2.1e-49 199.5 154 64.9
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 3.5e-49 198.7 202 53.5
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 3.5e-49 198.7 140 72.1
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 4.6e-49 198.4 156 66.7
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 1.0e-48 197.2 156 64.1
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.8e-48 196.4 154 63.6
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 2.3e-48 196.1 145 71.0
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 3.9e-48 195.3 216 51.4
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 6.7e-48 194.5 155 63.2
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.1e-47 193.7 140 69.3
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 5.7e-47 191.4 132 72.7
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 7.4e-47 191.0 179 59.8
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 1.3e-46 190.3 159 61.6
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 2.8e-46 189.1 139 67.6
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 8.2e-46 187.6 137 73.0
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.4e-45 186.8 165 58.2
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 2.4e-45 186.0 143 69.9
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 9.0e-45 184.1 142 64.1
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.0e-43 180.6 142 66.9
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.7e-43 179.9 106 86.8
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 3.8e-43 178.7 149 59.7
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 6.5e-43 177.9 180 53.9
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 5.5e-42 174.9 133 67.7
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.2e-41 173.7 149 58.4
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 3.0e-40 169.1 135 61.5
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 5.9e-36 154.8 128 62.5
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 2.2e-35 152.9 106 74.5
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.4e-32 143.7 85 81.2
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 6.7e-32 141.4 110 65.5
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.3e-30 137.1 89 74.2
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 1.1e-29 134.0 154 54.5
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.5e-28 130.2 77 79.2
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 2.6e-28 129.4 124 56.5
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.7e-27 126.7 143 48.3
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 4.7e-25 118.6 143 45.5
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.2e-22 109.8 66 78.8
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 4.1e-21 105.5 81 61.7
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 1.7e-19 100.1 118 49.2
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 5.0e-19 98.6 54 83.3
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 7.2e-18 94.7 70 70.0
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 7.2e-18 94.7 70 70.0
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.6e-17 93.6 89 58.4
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.0e-16 90.9 53 81.1
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 6.8e-16 88.2 59 71.2
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 9.8e-15 84.3 50 80.0
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.2e-12 77.4 53 69.8
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 7.7e-12 74.7 85 36.5


User provided reference genes

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