Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.3e-98 361.7 181 100.0
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.5e-77 291.2 177 80.8
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 3.6e-76 288.5 179 79.3
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 6.1e-76 287.7 182 79.1
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 8.8e-75 283.9 177 78.5
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.6e-74 282.3 184 76.1
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 7.4e-74 280.8 176 77.3
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 7.4e-74 280.8 180 76.7
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 8.2e-73 277.3 179 76.0
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.1e-72 276.9 182 75.8
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 7.0e-72 274.2 174 77.0
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 7.0e-72 274.2 175 76.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 7.0e-72 274.2 174 75.9
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 7.0e-72 274.2 190 71.6
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 9.1e-72 273.9 174 77.0
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.0e-71 272.7 177 73.4
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.0e-71 272.7 182 74.7
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.6e-71 272.3 182 75.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 3.5e-71 271.9 176 74.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.0e-70 270.4 175 74.9
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.2e-70 269.2 177 75.7
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.2e-70 269.2 183 74.3
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.8e-70 268.5 174 74.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 5.0e-70 268.1 174 74.7
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 5.0e-70 268.1 173 75.1
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.5e-70 267.7 181 73.5
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.5e-70 267.7 174 74.7
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.1e-69 266.9 178 73.0
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.4e-69 266.5 174 74.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.4e-69 266.5 185 71.9
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 3.2e-69 265.4 172 74.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 3.2e-69 265.4 176 73.9
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 4.2e-69 265.0 174 73.6
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.2e-68 263.5 171 75.4
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.1e-68 262.7 178 72.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 3.6e-68 261.9 191 67.5
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 6.1e-68 261.2 181 70.7
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 6.1e-68 261.2 173 73.4
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 8.0e-68 260.8 175 72.0
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.0e-67 260.4 189 69.8
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.0e-67 260.4 185 70.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 6.7e-67 257.7 160 78.1
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 3.3e-66 255.4 174 69.5
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 5.7e-66 254.6 168 72.0
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 5.7e-66 254.6 181 68.0
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 5.7e-66 254.6 170 71.8
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 7.4e-66 254.2 189 69.8
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.7e-65 253.1 175 72.0
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 3.7e-65 251.9 176 68.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 6.3e-65 251.1 194 68.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 8.2e-65 250.8 209 62.2
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.4e-64 250.0 181 68.0
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.4e-64 250.0 181 68.0
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.8e-64 249.6 182 70.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 2.4e-64 249.2 177 68.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.1e-64 248.8 166 77.1
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 4.1e-64 248.4 166 74.7
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.1e-64 247.3 174 70.7
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 5.9e-63 244.6 175 70.3
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 3.8e-62 241.9 183 67.8
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.5e-62 240.7 183 67.8
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 3.2e-61 238.8 173 65.3
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.4e-61 237.3 183 67.2
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-60 236.9 183 66.1
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-60 235.7 173 68.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.6e-60 235.3 183 66.1
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 4.4e-58 228.4 234 54.3
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-57 226.1 167 67.1
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-56 223.8 177 65.5
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.8e-56 223.0 170 64.1
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 7.0e-56 221.1 173 67.1
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-55 219.2 175 62.9
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.7e-55 219.2 191 62.3
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 7.7e-55 217.6 178 62.9
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.9e-54 215.7 136 78.7
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-53 213.8 173 63.6
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.2e-53 212.2 187 57.8
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 6.1e-52 208.0 149 69.1
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.8e-51 206.5 177 58.2
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 2.3e-51 206.1 133 75.9
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.0e-51 205.7 172 57.0
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 3.0e-51 205.7 138 73.9
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 5.2e-51 204.9 172 57.0
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.6e-50 202.6 177 55.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 3.4e-50 202.2 135 74.8
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 3.4e-50 202.2 144 72.9
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.4e-50 201.8 157 59.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.8e-49 199.1 170 58.2
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.4e-48 196.1 172 57.6
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.1e-48 195.3 172 55.2
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 9.1e-48 194.1 149 65.8
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.5e-47 192.2 172 56.4
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 5.9e-47 191.4 172 55.8
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.0e-46 190.7 172 56.4
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.0e-46 190.7 175 56.6
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 2.3e-46 189.5 121 76.9
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-45 186.8 128 71.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.5e-45 186.8 121 76.0
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 2.5e-45 186.0 176 56.2
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.5e-45 186.0 179 54.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.6e-44 183.3 237 46.8
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.1e-44 183.0 174 53.4
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.1e-44 183.0 174 53.4
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.6e-44 182.2 176 55.7
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 4.7e-44 181.8 174 52.3
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-43 180.3 113 77.9
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 3.0e-43 179.1 172 55.2
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.5e-42 176.8 174 52.3
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 4.4e-42 175.3 165 57.0
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 9.8e-42 174.1 165 57.0
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.9e-41 171.8 119 70.6
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.4e-40 170.2 135 65.2
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.3e-38 163.7 124 66.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.7e-36 155.2 138 59.4
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 5.8e-34 148.3 157 52.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.3e-33 147.1 183 44.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.7e-33 146.7 178 44.9
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 2.2e-33 146.4 178 44.9
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 8.3e-33 144.4 176 44.9
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 8.3e-33 144.4 137 54.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-32 144.1 121 59.5
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.4e-32 142.9 177 44.6
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 3.2e-32 142.5 170 45.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.0e-31 139.8 169 45.0
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 2.0e-31 139.8 171 43.3
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-31 139.4 117 60.7
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 4.6e-31 138.7 189 40.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 8.6e-30 134.4 139 51.8
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.5e-29 132.9 118 57.6
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 5.6e-29 131.7 175 41.7
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.0e-27 125.6 169 40.2
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 8.9e-27 124.4 83 75.9
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 3.7e-25 119.0 169 35.5
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 2.7e-23 112.8 131 51.1
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.5e-21 106.3 167 37.7
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-19 100.9 130 45.4
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.0e-18 96.7 168 33.9
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 5.8e-18 95.1 63 71.4
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.4e-16 89.7 57 75.4
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 7.1e-16 88.2 57 73.7
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 9.2e-16 87.8 89 52.8
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.7e-15 86.3 57 73.7
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.6e-15 85.5 57 71.9
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.0e-14 82.8 94 51.1
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.3e-13 79.0 57 66.7
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.8e-11 73.6 41 80.5
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 5.2e-11 72.0 73 50.7
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 5.2e-11 72.0 87 46.0
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 6.8e-11 71.6 46 71.7
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 8.7e-06 54.7 66 43.9


User provided reference genes

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