Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.3e-174 616.3 319 100.0
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.9e-121 439.1 352 68.5
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.4e-115 420.2 315 72.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 9.3e-112 407.5 320 70.6
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 6.0e-111 404.8 314 69.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.6e-106 389.4 320 68.1
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 9.9e-106 387.5 320 67.2
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.3e-105 387.1 314 66.2
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.7e-105 386.7 301 70.1
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.7e-105 386.7 340 64.1
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.2e-105 386.3 320 65.9
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 6.4e-105 384.8 290 72.1
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 8.4e-105 384.4 316 67.1
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.1e-104 384.0 321 69.5
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.1e-104 384.0 322 66.1
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 3.2e-104 382.5 291 71.1
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 9.3e-104 380.9 316 64.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.1e-103 379.8 320 64.4
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.7e-103 379.4 316 66.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 4.6e-103 378.6 319 66.1
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 7.9e-103 377.9 318 66.7
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.9e-103 377.9 296 69.9
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.0e-102 377.5 316 64.9
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.0e-102 377.5 319 67.7
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.0e-102 377.5 314 66.2
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.3e-102 377.1 316 64.6
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.0e-102 375.9 325 64.3
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.7e-102 374.8 310 66.8
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 6.7e-102 374.8 311 67.8
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 8.7e-102 374.4 311 65.9
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 8.7e-102 374.4 287 71.4
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.1e-101 374.0 314 64.6
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.5e-101 373.6 315 64.8
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.3e-101 372.1 320 63.4
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 4.3e-101 372.1 281 70.1
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 7.4e-101 371.3 316 62.3
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 7.4e-101 371.3 281 69.8
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.1e-100 369.8 320 65.0
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 2.1e-100 369.8 281 69.4
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.8e-100 369.4 313 64.5
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.7e-100 369.0 272 71.0
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.7e-100 369.0 325 63.1
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 3.7e-100 369.0 314 64.6
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 3.7e-100 369.0 314 65.3
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 8.1e-100 367.9 320 63.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 8.1e-100 367.9 316 64.9
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-99 367.1 316 63.9
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.8e-99 366.7 317 62.5
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.4e-99 366.3 279 66.7
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.0e-99 365.5 314 65.6
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 4.0e-99 365.5 314 64.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.0e-99 364.4 316 63.3
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.5e-98 363.6 318 63.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.0e-98 363.2 267 72.3
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 2.2e-97 359.8 286 67.1
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.8e-97 359.0 317 63.1
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 4.9e-97 358.6 276 69.6
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.4e-96 357.1 280 67.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.4e-96 357.1 279 68.5
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.4e-96 357.1 317 64.4
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.9e-96 356.7 317 64.0
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.5e-96 356.3 259 73.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.2e-96 355.5 314 63.1
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 5.5e-96 355.1 263 72.2
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 5.5e-96 355.1 301 65.4
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 9.3e-96 354.4 276 69.2
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.6e-95 353.6 316 63.6
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.1e-95 353.2 279 67.7
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.6e-95 352.1 314 63.1
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 4.6e-95 352.1 260 70.8
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 1.8e-94 350.1 315 61.6
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.1e-94 348.6 314 60.5
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 5.1e-94 348.6 299 62.5
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 8.7e-94 347.8 288 65.6
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.1e-93 347.4 271 66.4
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.5e-93 347.1 269 68.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.5e-93 346.3 276 65.6
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 3.3e-93 345.9 275 64.7
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 3.3e-93 345.9 275 64.7
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 4.3e-93 345.5 271 66.1
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 4.3e-93 345.5 271 66.1
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 5.7e-93 345.1 276 65.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 7.4e-93 344.7 286 63.6
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.3e-92 344.0 260 69.6
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.6e-92 343.6 254 71.3
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 4.8e-92 342.0 276 64.5
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 8.2e-92 341.3 262 68.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.1e-91 340.9 262 67.9
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 2.4e-91 339.7 268 66.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 6.9e-91 338.2 277 66.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 9.0e-91 337.8 276 64.5
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 9.0e-91 337.8 276 64.5
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 9.0e-91 337.8 276 64.5
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.8e-90 335.1 320 58.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.0e-89 334.3 284 64.1
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.3e-89 334.0 277 65.0
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.3e-89 334.0 316 60.1
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 5.0e-89 332.0 283 62.5
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 5.0e-89 332.0 283 62.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 5.0e-89 332.0 272 64.7
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 7.2e-88 328.2 307 59.3
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.1e-87 325.1 274 63.5
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.3e-86 323.9 263 63.9
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 5.1e-86 322.0 296 60.5
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.1e-85 320.9 305 58.7
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.9e-85 320.1 288 60.8
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 2.8e-84 316.2 273 61.2
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.2e-79 300.8 234 67.5
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.1e-79 300.1 234 67.9
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.6e-79 298.9 256 62.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 6.1e-79 298.5 231 69.7
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.0e-78 297.7 222 71.2
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 2.3e-78 296.6 231 69.7
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 3.0e-78 296.2 315 54.6
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 5.1e-78 295.4 279 58.1
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.0e-77 293.5 260 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 9.7e-77 291.2 261 59.8
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.7e-76 290.4 229 66.4
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 4.8e-76 288.9 229 65.9
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 9.1e-75 284.6 262 61.1
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.7e-74 281.6 265 60.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.4e-72 277.3 252 61.1
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.5e-72 276.6 231 64.5
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 5.5e-72 275.4 259 57.9
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 7.2e-72 275.0 263 60.8
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 8.8e-70 268.1 197 72.1
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 2.0e-69 266.9 271 55.7
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.0e-69 266.9 229 62.4
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 3.2e-64 249.6 278 50.7
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 3.2e-64 249.6 268 53.4
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.2e-64 249.2 259 54.1
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.5e-64 248.8 217 65.0
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.4e-62 244.2 207 65.2
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.0e-62 243.0 223 62.3
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.4e-59 233.4 257 50.2
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 8.5e-57 224.9 264 48.1
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.9e-56 223.8 150 75.3
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.4e-53 212.6 316 44.0
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.0e-51 205.3 201 59.7
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 4.7e-47 192.6 176 60.8
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-46 191.0 149 65.8
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.4e-45 186.4 149 65.8
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.0e-41 172.6 133 68.4
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.3e-40 169.9 147 63.9
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.3e-40 169.9 147 63.9
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.8e-38 164.1 188 52.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 5.4e-35 152.5 118 68.6
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 6.2e-31 139.0 146 52.7
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.9e-27 127.5 74 83.8
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 7.0e-27 125.6 74 82.4
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 9.2e-27 125.2 74 82.4
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.2e-26 124.8 74 82.4
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-26 124.4 105 61.9
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.6e-26 122.9 74 79.7
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.6e-24 115.9 75 81.3
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 4.0e-22 109.8 95 58.9
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.2e-20 104.0 68 80.9
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 3.0e-17 93.6 70 72.9
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.9e-17 93.2 227 30.8
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 5.1e-17 92.8 65 80.0
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.5e-16 91.3 64 73.4
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.2e-13 81.6 64 70.3
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 3.4e-13 80.1 83 56.6
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.3e-12 78.2 44 84.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 1.7e-12 77.8 54 79.6
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.9e-11 74.3 44 77.3
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.5e-10 70.1 64 57.8
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 7.3e-08 62.4 60 56.7


User provided reference genes

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