Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 0.0e+00 3207.5 1657 100.0
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 0.0e+00 1463.0 1660 54.8
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1328.2 1650 52.4
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 0.0e+00 1283.9 984 71.7
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1260.4 1738 48.5
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1216.8 1711 47.2
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1191.4 1662 48.0
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 0.0e+00 1169.5 1659 47.3
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 0.0e+00 1142.5 1745 46.3
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1096.3 1669 45.4
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 0.0e+00 1090.9 1660 46.0
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1088.2 1669 45.5
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1085.5 1666 45.9
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.0e-307 1060.8 1674 44.5
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.3e-302 1043.1 1666 44.8
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 3.0e-302 1042.7 1661 44.7
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 6.6e-302 1041.6 1748 43.6
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 7.3e-301 1038.1 1765 44.1
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.6e-300 1036.9 1668 44.4
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 6.8e-299 1031.6 1748 44.3
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 2.2e-297 1026.5 1665 44.6
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.1e-296 1024.2 1665 44.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 7.0e-296 1021.5 1673 43.8
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.6e-292 1010.4 1673 43.8
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 4.7e-292 1008.8 1660 44.2
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.4e-288 997.3 1667 44.2
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 2.1e-287 993.4 1663 43.5
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.6e-286 988.4 1659 43.3
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 8.9e-283 978.0 1662 42.8
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 9.9e-282 974.5 1669 42.9
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 7.1e-280 968.4 1658 42.3
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 8.7e-278 961.4 1666 42.3
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 3.3e-277 959.5 1656 42.6
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.6e-277 958.0 1668 42.5
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-275 954.5 1653 42.5
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 2.4e-272 943.3 1717 41.1
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.1e-271 940.3 1660 42.2
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.9e-270 936.0 1646 42.2
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.1e-270 935.6 1662 42.2
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.1e-267 927.9 1716 40.4
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 3.1e-267 926.4 1665 41.7
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 3.1e-267 926.4 1660 42.4
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 9.9e-266 921.4 1702 40.7
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 6.7e-262 908.7 1685 41.2
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.6e-260 904.0 1655 41.7
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 3.7e-260 902.9 1679 41.7
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 7.1e-256 888.6 1688 40.6
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 2.7e-255 886.7 1644 40.9
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.6e-252 877.5 1673 41.1
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 2.6e-250 870.2 1666 41.5
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 4.5e-250 869.4 1473 42.8
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.9e-246 856.3 1661 39.6
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 8.7e-246 855.1 1704 39.1
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 9.7e-245 851.7 1667 40.7
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.2e-244 850.5 1468 42.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 5.9e-242 842.4 1675 40.8
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 3.0e-238 830.1 1674 39.1
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 2.8e-236 823.5 1664 39.1
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 2.9e-233 813.5 1661 39.6
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 3.2e-232 810.1 1646 39.2
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.7e-231 807.0 1654 38.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 4.7e-231 806.2 1676 39.7
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 8.8e-230 802.0 1662 39.8
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 9.7e-229 798.5 1657 39.1
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.8e-227 794.3 1698 39.2
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 7.0e-227 792.3 1644 38.7
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 9.4e-224 781.9 1675 37.9
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.8e-222 777.7 1736 37.0
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.0e-222 776.9 1673 38.8
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 3.9e-222 776.5 1673 37.7
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 4.4e-221 773.1 1655 38.5
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.8e-220 770.4 1560 38.6
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 4.8e-220 769.6 1666 38.0
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 8.5e-217 758.8 1662 38.6
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 4.7e-215 753.1 1658 38.2
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 3.1e-211 740.3 1672 37.7
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 5.9e-210 736.1 1683 37.6
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 6.8e-206 722.6 1654 38.1
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 4.1e-203 713.4 1654 37.3
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 9.1e-203 712.2 1677 36.7
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.2e-202 711.8 1677 36.7
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.7e-201 708.0 1397 39.4
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 6.6e-201 706.1 1684 36.8
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 5.5e-200 703.0 1664 35.8
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 3.1e-195 687.2 1666 35.3
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.5e-192 678.3 1335 38.9
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 6.1e-191 672.9 1784 36.4
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.3e-188 662.5 1277 39.9
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 7.3e-184 649.4 1652 35.8
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 4.0e-182 643.7 1654 35.8
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.3e-176 622.9 1671 34.6
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.6e-170 605.1 1655 34.4
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 4.3e-168 597.0 1658 33.8
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 2.1e-167 594.7 1658 33.7
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 5.8e-165 586.6 1414 35.4
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 3.0e-161 574.3 1269 39.4
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 2.8e-159 567.8 1664 33.1
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 1.2e-157 562.4 1673 32.8
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 4.4e-157 560.5 1664 33.1
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 5.4e-155 553.5 1671 33.3
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 7.1e-155 553.1 1691 33.7
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 3.3e-152 544.3 1668 32.6
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 7.3e-152 543.1 1667 32.5
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 8.1e-151 539.7 1657 32.8
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 5.3e-150 537.0 1660 32.2
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 6.9e-150 536.6 1661 32.2
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 4.2e-147 527.3 1663 32.4
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.6e-146 525.4 1641 32.6
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.1e-142 512.7 1692 31.9
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 5.8e-141 506.9 1646 33.2
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 3.2e-139 501.1 1702 31.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 4.3e-136 490.7 1482 33.2
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.2e-133 482.6 1663 30.9
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 8.7e-129 466.5 1650 29.9
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.1e-126 459.5 1668 30.7
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 5.3e-126 457.2 1692 31.1
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 4.5e-125 454.1 774 40.7
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.3e-124 452.6 1683 30.7
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.4e-121 442.6 1691 30.5
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 2.0e-120 438.7 489 53.8
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.5e-116 423.3 707 41.2
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.1e-110 406.4 1669 29.3
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 3.8e-108 397.9 1633 28.6
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.5e-107 395.2 1666 30.9
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.6e-106 392.5 1674 29.5
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 7.2e-99 367.1 1533 30.5
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.2e-91 341.3 324 63.0
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.8e-88 330.1 1610 28.7
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.4e-86 325.5 1654 27.1
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.5e-80 306.2 1557 29.7
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.9e-76 292.0 1495 29.6
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 3.6e-74 285.0 496 41.7
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.9e-71 275.4 201 77.6
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 5.0e-68 264.6 199 76.9
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.2e-62 243.8 1533 26.6
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 8.1e-58 230.7 528 35.8
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.1e-57 230.3 205 63.9
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.4e-56 224.9 1631 27.3
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.5e-53 215.3 143 77.6
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.4e-49 202.6 205 61.0
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.0e-49 201.8 449 36.7
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.1e-46 191.0 433 36.3
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.4e-40 172.2 520 32.3
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.1e-29 136.3 77 87.0
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.0e-28 134.0 1645 25.2
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.8e-26 125.2 1474 23.9
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 6.2e-26 124.8 192 40.6
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.4e-25 123.6 511 32.1
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 6.7e-20 104.8 1387 24.7
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.3e-19 102.4 234 40.2
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 2.6e-16 92.8 238 36.1
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.9e-16 91.7 1484 23.7
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 5.0e-15 88.6 160 40.0
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 8.4e-15 87.8 217 35.9
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 3.2e-14 85.9 632 27.1
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 6.1e-13 81.6 153 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 7.9e-13 81.3 1863 23.0
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 4.5e-08 65.5 148 41.9


User provided reference genes

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