Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0972 Trochodendron aralioides HOM05D003637 ORTHO05D004175 6.5e-112 407.5 223 100.0
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 2.7e-78 295.8 223 75.8
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 3.0e-48 196.1 220 52.7
GSVIVG01036288001 Vitis vinifera HOM05D003637 ORTHO05D004175 7.8e-41 171.4 216 50.9
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 5.1e-40 168.7 218 49.1
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 3.1e-37 159.5 222 47.7
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 5.2e-37 158.7 230 43.5
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 2.0e-36 156.8 210 45.7
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 2.0e-36 156.8 216 47.2
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 9.9e-36 154.5 210 44.8
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 2.2e-35 153.3 214 43.9
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 1.6e-33 147.1 204 47.5
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 6.0e-33 145.2 219 45.2
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 1.0e-32 144.4 220 44.5
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 2.3e-32 143.3 220 42.7
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 2.3e-32 143.3 220 42.7
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 3.9e-32 142.5 216 44.0
Haze_10275 Corylus avellana HOM05D003637 ORTHO05D004175 5.1e-32 142.1 211 42.7
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 5.1e-32 142.1 219 43.8
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 1.1e-31 141.0 212 43.4
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.9e-31 140.2 212 42.9
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 2.5e-31 139.8 222 41.4
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 3.3e-31 139.4 219 44.3
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 3.3e-31 139.4 221 44.8
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 1.6e-30 137.1 212 42.9
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 2.1e-30 136.7 204 44.1
vmacro18730 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 2.1e-30 136.7 224 41.5
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 6.2e-30 135.2 233 40.8
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 1.8e-29 133.7 222 41.4
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 9.0e-29 131.3 208 41.8
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 9.0e-29 131.3 219 44.7
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 5.8e-28 128.6 208 41.3
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 9.9e-28 127.9 223 38.6
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.3e-27 127.5 202 40.6
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 1.7e-27 127.1 214 40.7
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 3.8e-27 125.9 218 40.8
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 4.9e-27 125.6 224 39.3
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 8.4e-27 124.8 211 46.0
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 8.4e-27 124.8 211 46.0
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 1.4e-26 124.0 218 40.8
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.4e-26 124.0 202 39.6
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.4e-26 124.0 202 40.1
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 1.4e-26 124.0 212 39.6
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 1.9e-26 123.6 215 39.1
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 1.9e-26 123.6 207 39.1
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 4.2e-26 122.5 216 41.7
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 5.4e-26 122.1 208 41.3
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 7.1e-26 121.7 235 39.6
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 9.3e-26 121.3 211 40.3
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 9.3e-26 121.3 211 40.3
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.2e-25 120.9 213 38.5
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 1.6e-25 120.6 207 39.1
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 2.1e-25 120.2 211 40.3
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 4.6e-25 119.0 213 38.5
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 4.6e-25 119.0 214 38.8
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 4.6e-25 119.0 207 38.6
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 6.0e-25 118.6 214 38.8
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 1.0e-24 117.9 212 42.0
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 1.8e-24 117.1 208 40.4
Lj8A738T8 Lonicera japonica HOM05D003637 ORTHO05D004175 2.3e-24 116.7 218 41.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.3e-24 116.7 211 42.2
BcaB04g19390 Brassica carinata HOM05D003637 ORTHO05D004175 5.1e-24 115.5 206 45.1
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 6.7e-24 115.2 214 38.3
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 6.7e-24 115.2 214 38.3
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 6.7e-24 115.2 209 37.3
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 1.1e-23 114.4 213 39.0
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 1.5e-23 114.0 213 39.0
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 2.5e-23 113.2 208 41.3
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 3.3e-23 112.8 231 38.1
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 9.6e-23 111.3 210 40.0
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 9.6e-23 111.3 217 38.7
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 9.6e-23 111.3 204 43.1
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 1.6e-22 110.5 215 37.7
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 2.8e-22 109.8 218 37.6
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 3.6e-22 109.4 226 36.3
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 3.6e-22 109.4 215 37.7
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 4.8e-22 109.0 213 40.8
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 1.1e-21 107.8 211 43.6
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 1.1e-21 107.8 211 38.9
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 1.8e-21 107.1 211 42.7
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 1.8e-21 107.1 211 42.7
Aa31LG11G13210 Aethionema arabicum HOM05D003637 ORTHO05D004175 4.0e-21 105.9 203 35.5
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 4.0e-21 105.9 210 38.6
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 5.3e-21 105.5 209 36.8
SHI17420 Sapria himalayana HOM05D003637 ORTHO05D004175 5.3e-21 105.5 219 35.2
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 1.2e-20 104.4 215 35.8
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 4.5e-20 102.4 230 33.5
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 7.6e-20 101.7 219 33.3
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 1.3e-19 100.9 205 39.0
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 2.9e-19 99.8 204 36.3
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 4.9e-19 99.0 205 37.6
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.4e-18 97.4 219 33.3
CDE10G0800 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 2.4e-18 96.7 179 37.4
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 7.1e-18 95.1 218 36.7
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 9.3e-18 94.7 183 37.7
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 1.2e-17 94.4 210 35.7
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 6.0e-17 92.0 177 41.2
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 6.0e-17 92.0 205 33.7
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.0e-16 91.3 211 38.9
Oeu019452.1 Olea europaea HOM05D003637 ORTHO05D004175 1.0e-16 91.3 217 35.0
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.3e-16 90.9 218 35.8
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 2.3e-16 90.1 212 33.5
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 6.7e-16 88.6 215 34.9
Oeu017573.1 Olea europaea HOM05D003637 ORTHO05D004175 8.7e-16 88.2 224 33.0
HPP92_000900 Vanilla planifolia HOM05D003637 ORTHO05D004175 8.7e-16 88.2 169 36.1
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 1.5e-15 87.4 217 34.1
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 1.9e-15 87.0 224 33.9
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 2.5e-15 86.7 217 34.1
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 2.5e-15 86.7 201 32.3
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 9.6e-15 84.7 225 33.8
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 9.6e-15 84.7 161 35.4
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 1.3e-14 84.3 91 50.5
Lsat_1_v5_gn_1_27560 Lactuca sativa HOM05D003637 ORTHO05D004175 1.6e-14 84.0 207 31.9
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 2.1e-14 83.6 217 33.6
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 1.1e-13 81.3 217 26.3
Lsat_1_v5_gn_7_60281 Lactuca sativa HOM05D003637 ORTHO05D004175 2.4e-13 80.1 207 30.9
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 3.1e-13 79.7 217 25.8
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 7.6e-12 75.1 167 31.7
Lsat_1_v5_gn_3_107861 Lactuca sativa HOM05D003637 ORTHO05D004175 1.7e-11 73.9 202 32.7
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 4.9e-11 72.4 232 29.3
FAN14G4419 Fragaria x ananassa HOM05D003637 ORTHO05D004175 4.2e-10 69.3 120 40.0
BNapus_Darmor_BZH_scaffold_99p00040 Brassica napus HOM05D003637 ORTHO05D004175 3.9e-08 62.8 76 47.4
Lsat_1_v5_gn_3_57620 Lactuca sativa HOM05D003637 ORTHO05D004175 1.1e-07 61.2 142 31.7
Nitab4.5_0002446g0110 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.1e-07 61.2 83 47.0
HanXRQChr01g0009581 Helianthus annuus HOM05D003637 ORTHO05D004175 7.4e-07 58.5 90 42.2
SEGI_15544 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 3.7e-06 56.2 174 30.5
SEGI_40078 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 6.3e-06 55.5 174 30.5


User provided reference genes

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