Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 2202.6 1098 100.0
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 1380.5 1106 65.0
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 1338.2 1105 64.4
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 1320.1 1108 60.8
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1304.7 1102 60.9
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 1302.7 1104 60.8
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 1301.2 1109 61.6
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 1295.4 1100 60.5
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1285.0 1108 60.7
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 1274.6 1110 60.3
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 1270.4 1098 60.2
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1265.0 1099 60.4
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 1250.3 1105 59.4
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 1250.0 1105 58.9
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1245.3 1102 58.6
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 1240.7 1103 58.8
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 1239.2 1106 58.1
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 1239.2 1105 58.3
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1236.1 1103 59.0
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 1235.7 1103 58.7
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 1233.8 1104 58.0
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 1233.8 1104 58.7
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 1232.2 1111 60.6
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1227.2 1104 57.6
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 1224.2 1101 56.7
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1223.8 1103 57.6
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1223.8 1103 58.3
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1223.4 1104 57.7
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1223.0 1103 57.6
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1220.3 1111 58.8
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1219.5 1104 57.6
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1218.8 1113 58.7
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 1211.8 1103 58.0
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1196.0 1074 58.5
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 1186.8 1125 56.6
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 1177.9 1103 56.2
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 1166.0 1106 56.2
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 1155.2 1105 56.6
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 1116.7 1100 54.6
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 1076.6 1130 53.2
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 1076.2 1102 54.2
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.5e-311 1073.2 1103 52.9
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 2.0e-310 1069.3 1102 54.0
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 4.4e-310 1068.1 1071 52.8
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 4.4e-310 1068.1 1071 52.8
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 3.7e-309 1065.1 1099 52.0
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 3.2e-305 1052.0 1105 51.9
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 5.5e-305 1051.2 1111 51.0
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 1.0e-303 1047.0 1105 51.5
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 3.9e-303 1045.0 1102 51.5
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 1.5e-302 1043.1 1100 51.1
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 1.5e-302 1043.1 1102 51.5
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 1.7e-301 1039.6 1099 50.9
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 1.7e-301 1039.6 1108 51.4
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 3.1e-300 1035.4 1104 50.3
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 1.2e-299 1033.5 1103 50.5
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 3.5e-299 1031.9 1101 51.7
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 1.7e-298 1029.6 1116 49.9
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 3.8e-298 1028.5 1105 51.0
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 1.5e-297 1026.5 1098 51.3
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 2.7e-296 1022.3 1101 50.0
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 6.1e-296 1021.1 1096 51.4
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 5.2e-295 1018.1 1121 51.6
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 1.8e-292 1009.6 1126 49.6
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 9.1e-292 1007.3 1107 50.0
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 4.5e-291 1005.0 1106 50.1
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 1.7e-290 1003.0 1103 50.8
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 2.0e-286 989.6 1107 49.0
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 4.4e-286 988.4 1100 50.2
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 5.4e-284 981.5 1074 49.3
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 7.0e-284 981.1 1098 48.5
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 2.1e-280 969.5 1107 49.2
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 1.5e-278 963.4 1119 47.7
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 3.4e-278 962.2 1101 47.3
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 5.7e-278 961.4 1101 48.4
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.2e-277 959.5 1101 49.0
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 1.4e-276 956.8 1100 48.6
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 1.2e-275 953.7 1102 48.3
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 2.5e-273 946.0 1102 48.0
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 2.1e-272 943.0 1102 47.8
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 4.7e-272 941.8 1100 47.5
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 1.4e-271 940.3 1101 47.9
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 8.9e-271 937.6 1101 47.8
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 9.8e-270 934.1 1098 47.5
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 1.2e-267 927.2 1111 47.3
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 3.6e-256 889.0 1101 46.1
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 7.1e-252 874.8 1113 44.8
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 2.3e-250 869.8 1102 46.6
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 3.1e-239 832.8 1121 45.0
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 7.6e-238 828.2 1102 45.3
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 2.0e-230 803.5 1103 44.1
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 2.2e-229 800.0 519 76.9
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.0e-218 764.6 594 65.7
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 3.9e-202 709.5 628 58.0
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 8.2e-192 675.2 567 62.8
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 2.9e-157 560.5 1110 34.2
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.4e-151 541.6 1243 32.9
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 9.9e-137 492.3 457 51.6
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.6e-123 448.4 1191 29.6
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 6.2e-107 393.3 832 34.3
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 1.1e-106 392.5 231 78.4
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 9.0e-98 362.8 392 50.8
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.9e-88 331.3 197 79.7
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 7.9e-78 296.6 263 59.7
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 8.8e-77 293.1 182 74.7
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 1.0e-69 269.6 435 39.3
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 4.1e-58 231.1 568 31.0
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 1.6e-57 229.2 597 31.7
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 8.5e-56 223.4 409 38.1
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.2e-54 219.5 502 33.5
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.6e-41 176.0 336 34.8
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 2.0e-41 175.6 223 45.7
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 9.5e-39 166.8 523 28.9
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 2.3e-37 162.2 118 66.9
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 5.2e-37 161.0 102 79.4
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.2e-37 161.0 138 61.6
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 8.9e-37 160.2 120 66.7
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.7e-33 148.7 499 29.5
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 4.9e-27 127.9 104 61.5
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 7.8e-25 120.6 68 82.4
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 2.3e-21 109.0 121 49.6
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 3.7e-19 101.7 110 49.1
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.9e-18 99.4 540 23.9
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 7.8e-17 94.0 57 86.0
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 3.3e-15 88.6 51 76.5
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.2e-12 80.1 116 44.8
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 4.9e-11 74.7 96 44.8
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 8.4e-11 73.9 98 42.9
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 2.7e-09 68.9 335 25.1


User provided reference genes

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