Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 4.0e-142 508.1 250 100.0
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 5.2e-110 401.4 250 79.6
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 6.8e-110 401.0 251 80.5
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.9e-108 395.6 250 78.8
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.1e-107 393.7 250 78.0
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.4e-107 393.3 248 78.2
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 4.1e-107 391.7 250 76.4
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 4.1e-107 391.7 250 78.0
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.2e-106 390.2 250 75.2
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.6e-106 389.8 250 77.2
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 3.5e-106 388.7 251 78.9
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.5e-106 388.7 224 85.7
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 6.0e-106 387.9 248 76.2
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 6.0e-106 387.9 250 78.0
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 6.0e-106 387.9 250 76.4
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 7.8e-106 387.5 250 76.0
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.7e-105 386.3 250 74.4
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.7e-105 386.3 248 74.6
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 5.0e-105 384.8 250 76.8
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 5.0e-105 384.8 250 78.0
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 6.6e-105 384.4 250 77.2
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 2.5e-104 382.5 250 74.4
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 9.5e-104 380.6 249 75.5
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.2e-103 380.2 250 75.6
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.2e-103 380.2 250 74.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 2.1e-103 379.4 248 74.2
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 2.8e-103 379.0 249 75.5
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.6e-103 378.6 250 76.4
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 3.6e-103 378.6 250 74.8
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.7e-103 378.3 250 76.4
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.7e-103 378.3 250 74.4
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.1e-102 377.1 251 76.1
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.1e-102 377.1 250 76.4
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.3e-102 375.9 250 74.8
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.3e-102 375.9 251 73.7
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.2e-101 373.6 251 72.1
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.2e-101 373.6 251 75.7
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.5e-101 373.2 251 74.9
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 2.0e-101 372.9 249 72.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.6e-101 372.5 252 72.2
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 2.6e-101 372.5 251 76.1
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 2.6e-101 372.5 252 73.0
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 5.8e-101 371.3 250 71.6
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 7.5e-101 370.9 251 73.3
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.7e-100 369.8 252 71.0
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.7e-100 369.8 250 72.0
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.7e-100 368.6 250 74.8
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.7e-100 368.6 250 71.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.9e-100 368.2 250 74.8
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 4.9e-100 368.2 252 71.8
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.4e-100 367.9 250 74.4
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.4e-100 367.9 250 74.4
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 6.4e-100 367.9 252 71.0
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 6.4e-100 367.9 248 72.2
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.1e-99 367.1 251 73.3
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.1e-99 367.1 252 71.0
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.4e-99 366.7 250 71.2
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 1.4e-99 366.7 252 72.2
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.9e-99 366.3 252 71.4
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 2.4e-99 365.9 250 71.6
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 3.2e-99 365.5 250 74.8
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.2e-99 365.5 250 74.8
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.2e-99 365.5 250 74.0
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.2e-99 365.5 250 74.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 9.2e-99 364.0 250 71.6
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.6e-98 363.2 250 74.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.1e-98 362.8 250 71.2
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 6.0e-98 361.3 252 70.2
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 7.8e-98 360.9 252 70.2
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 7.8e-98 360.9 252 68.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.0e-97 360.5 252 69.4
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.3e-97 360.1 250 70.4
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.0e-97 359.0 252 69.8
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.0e-97 359.0 250 71.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.9e-97 358.6 261 67.4
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 6.6e-97 357.8 250 70.4
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.6e-97 357.8 250 68.8
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.6e-97 357.8 250 69.2
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 8.6e-97 357.5 250 70.4
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 69.4
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 3.3e-96 355.5 250 70.4
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.3e-96 355.1 250 68.8
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 5.6e-96 354.8 250 70.8
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 5.6e-96 354.8 250 70.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 7.3e-96 354.4 250 68.0
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.2e-95 353.6 250 68.4
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-95 353.6 250 70.4
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.6e-95 353.2 250 68.8
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.6e-95 353.2 250 70.0
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.1e-95 352.8 250 68.0
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.1e-95 352.8 250 68.8
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.6e-95 352.1 250 67.6
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 4.7e-95 351.7 294 62.6
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.1e-94 349.0 250 66.4
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 6.8e-94 347.8 253 68.0
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.0e-93 346.3 250 67.6
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 2.2e-92 342.8 253 68.0
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.9e-92 342.4 239 69.0
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.9e-92 342.4 250 67.6
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 6.4e-92 341.3 250 67.2
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.9e-91 339.7 256 67.2
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.9e-91 339.7 253 66.8
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 2.4e-91 339.3 243 67.5
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 3.2e-91 339.0 243 67.5
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 4.1e-91 338.6 243 67.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 5.4e-91 338.2 251 66.5
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.6e-90 336.7 240 69.6
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 3.5e-90 335.5 253 67.6
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.5e-90 335.5 240 69.6
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 4.6e-90 335.1 251 68.5
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.7e-89 333.2 243 67.9
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.7e-89 333.2 243 67.9
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 5.1e-89 331.6 274 62.4
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 5.1e-89 331.6 274 62.4
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 6.6e-89 331.3 243 67.1
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.2e-87 327.0 250 66.8
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.4e-86 323.6 243 65.4
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.2e-85 320.5 291 57.7
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.5e-85 320.1 254 63.4
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.6e-85 319.3 250 64.4
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 4.4e-85 318.5 250 65.2
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 7.6e-85 317.8 184 84.8
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 1.7e-84 316.6 241 65.6
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.5e-82 308.9 198 76.8
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 7.8e-82 307.8 248 63.3
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.1e-80 303.9 244 63.9
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 4.8e-79 298.5 174 83.9
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 8.1e-79 297.7 251 62.9
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 7.6e-77 291.2 250 62.0
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.0e-73 280.8 175 77.1
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 2.2e-68 263.1 186 72.0
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.4e-67 259.6 182 73.1
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 5.5e-67 258.5 153 80.4
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 2.5e-64 249.6 259 49.8
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 5.6e-64 248.4 147 81.6
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 5.6e-64 248.4 147 81.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 9.0e-54 214.5 180 57.2
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.0e-52 211.1 171 63.2
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.4e-46 190.7 193 56.0
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-44 184.5 189 55.6
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-44 184.5 189 55.6
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 3.9e-41 172.6 110 75.5
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.8e-38 163.7 154 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 2.9e-36 156.4 141 56.7
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.2e-33 145.6 88 77.3
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 6.5e-28 128.6 75 85.3
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 5.2e-25 119.0 75 76.0
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 5.7e-24 115.5 66 80.3
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 7.5e-24 115.2 174 38.5
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 2.4e-22 110.2 75 76.0
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 7.7e-21 105.1 168 36.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.7e-20 104.0 100 56.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.7e-20 104.0 100 56.0
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 2.2e-20 103.6 108 57.4
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 2.0e-13 80.5 83 56.6
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 2.0e-13 80.5 94 53.2
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 2.8e-10 70.1 51 64.7
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.3e-09 67.0 234 28.2
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 3.4e-08 63.2 54 63.0
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 5.7e-08 62.4 174 28.7
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.1e-06 58.2 38 71.1
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 1.4e-06 57.8 65 47.7
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 7.0e-06 55.5 46 56.5


User provided reference genes

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