Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 9.0e-231 803.1 378 100.0
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.3e-165 586.6 378 71.4
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 9.5e-164 580.5 377 71.6
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.1e-163 579.3 379 70.4
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 5.7e-161 571.2 378 70.4
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.7e-160 569.7 378 70.4
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 5.4e-159 564.7 379 69.4
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 3.0e-157 558.9 382 69.1
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.1e-156 557.0 379 68.3
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.1e-156 557.0 345 74.2
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 4.3e-156 555.1 377 66.8
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 6.8e-154 547.7 381 67.2
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 6.8e-154 547.7 379 68.1
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.5e-153 546.6 377 66.6
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 2.0e-153 546.2 382 66.5
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.4e-153 545.4 380 66.8
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 5.8e-153 544.7 379 67.0
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.6e-150 536.6 386 65.8
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.0e-150 536.2 385 64.4
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.0e-150 536.2 378 64.8
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 2.0e-150 536.2 378 65.6
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 3.5e-150 535.4 377 65.8
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 4.6e-150 535.0 387 66.4
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 7.8e-150 534.3 407 61.7
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.3e-149 533.5 379 65.7
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 5.0e-149 531.6 375 66.1
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 4.3e-148 528.5 401 63.8
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 5.6e-148 528.1 378 64.6
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 7.3e-148 527.7 380 64.5
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.6e-147 526.6 379 63.1
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.8e-147 525.8 381 63.8
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.7e-147 525.0 380 64.2
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 4.7e-147 525.0 362 66.3
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 8.1e-147 524.2 382 64.4
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 8.1e-147 524.2 382 64.4
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.3e-146 522.7 385 63.9
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 3.1e-146 522.3 378 64.0
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 3.4e-145 518.8 378 64.0
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 3.4e-145 518.8 378 64.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 4.4e-145 518.5 378 63.0
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.3e-144 516.9 401 61.1
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 2.2e-144 516.2 380 63.7
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.2e-144 516.2 378 65.3
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 3.7e-144 515.4 386 63.7
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 4.9e-144 515.0 382 63.9
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.9e-143 513.1 469 53.9
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.6e-142 510.0 381 62.5
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 7.8e-142 507.7 378 61.6
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 3.0e-141 505.8 378 63.0
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 3.9e-141 505.4 383 62.9
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 3.9e-141 505.4 378 62.2
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.9e-141 505.4 379 61.2
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 5.1e-141 505.0 406 56.2
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 6.6e-141 504.6 380 63.4
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.5e-140 503.4 383 62.4
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 2.1e-139 499.6 395 61.0
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 2.8e-139 499.2 378 62.7
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 2.8e-139 499.2 377 62.6
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 3.6e-139 498.8 378 60.8
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.2e-137 493.8 378 60.3
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.2e-137 493.8 382 61.3
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.6e-137 492.7 378 61.9
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.9e-136 489.2 349 67.9
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 3.8e-136 488.8 379 60.2
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 6.4e-136 488.0 378 60.6
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 8.4e-136 487.6 378 61.4
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.1e-135 487.3 379 59.9
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 2.4e-135 486.1 378 60.8
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 5.4e-135 485.0 370 60.5
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 7.1e-135 484.6 378 60.1
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.2e-134 483.8 348 65.8
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.3e-133 480.3 378 59.8
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.0e-130 468.8 382 59.7
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 3.4e-129 465.7 362 59.7
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 5.8e-129 464.9 421 54.4
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 4.9e-128 461.8 388 57.0
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 4.6e-126 455.3 350 58.6
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 2.8e-123 446.0 379 55.4
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 7.6e-121 438.0 309 67.3
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 9.6e-116 421.0 322 61.8
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 9.0e-114 414.5 353 57.8
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.2e-113 414.1 335 59.1
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 3.4e-113 412.5 384 54.4
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 2.2e-112 409.8 309 58.6
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 6.4e-112 408.3 275 68.7
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 1.1e-106 391.0 381 49.9
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 5.5e-103 378.6 390 49.7
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.3e-101 374.0 392 48.2
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 9.6e-100 367.9 285 61.8
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.1e-98 362.8 250 66.4
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 2.0e-97 360.1 311 57.2
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.2e-94 350.9 378 45.0
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 7.9e-94 348.2 268 61.6
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.2e-89 334.3 398 44.2
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.0e-88 331.3 378 46.6
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.2e-86 324.3 381 43.0
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.5e-79 300.1 312 51.0
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 4.4e-76 289.3 379 42.2
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 4.1e-74 282.7 358 43.6
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 3.3e-68 263.1 220 56.4
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 9.5e-47 191.8 297 35.0
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 8.6e-40 168.7 197 48.2
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.9e-39 167.5 204 44.6
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 2.8e-38 163.7 371 32.1
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 6.2e-38 162.5 379 30.3
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 8.0e-38 162.2 371 31.8
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 8.0e-38 162.2 371 31.8
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.1e-37 161.8 153 51.0
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.1e-37 161.8 373 29.8
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 1.4e-37 161.4 377 31.3
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.3e-37 160.6 370 31.1
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 2.3e-37 160.6 381 31.5
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 3.1e-37 160.2 376 31.6
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 8.9e-37 158.7 371 31.3
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.2e-36 158.3 375 29.9
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.5e-36 157.9 373 30.0
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 2.6e-36 157.1 388 28.6
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.6e-36 157.1 384 31.2
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 2.6e-36 157.1 384 31.2
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.8e-36 156.0 375 29.6
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 9.8e-36 155.2 379 31.7
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.3e-35 154.8 371 31.3
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.7e-35 154.5 375 30.7
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.9e-35 153.7 377 31.3
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 3.7e-35 153.3 371 29.4
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 3.7e-35 153.3 371 29.4
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 3.7e-35 153.3 381 30.4
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 6.4e-35 152.5 377 31.0
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 6.4e-35 152.5 377 30.5
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 8.3e-35 152.1 375 30.7
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 8.3e-35 152.1 375 30.7
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 8.3e-35 152.1 375 30.9
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.1e-34 151.8 378 29.1
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.9e-34 151.0 371 28.0
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.9e-34 151.0 376 27.9
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 2.4e-34 150.6 384 29.9
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 2.4e-34 150.6 370 30.5
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 3.2e-34 150.2 374 31.0
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 3.2e-34 150.2 382 29.8
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 3.2e-34 150.2 369 30.9
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 3.2e-34 150.2 380 30.3
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 3.2e-34 150.2 372 30.6
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 4.1e-34 149.8 375 31.5
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 7.0e-34 149.1 354 31.1
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 9.2e-34 148.7 378 28.8
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.2e-33 148.3 371 28.8
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.6e-33 147.9 382 29.6
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 2.7e-33 147.1 376 29.0
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.7e-33 147.1 377 28.4
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 2.7e-33 147.1 371 31.5
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.7e-33 147.1 378 31.0
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 4.6e-33 146.4 371 28.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 7.8e-33 145.6 375 29.3
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 7.8e-33 145.6 372 29.8
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.3e-32 144.8 383 28.5
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 2.3e-32 144.1 364 29.4
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 3.9e-32 143.3 374 29.9
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 6.6e-32 142.5 383 29.5
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 1.1e-31 141.7 372 29.0
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 5.6e-31 139.4 390 29.2
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 5.6e-31 139.4 375 28.5
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 8.1e-30 135.6 130 54.6
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 7.5e-28 129.0 133 48.1
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 4.9e-27 126.3 377 26.3
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 4.6e-25 119.8 135 45.9
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 7.8e-25 119.0 86 67.4
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.0e-24 118.6 72 73.6
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.3e-24 117.5 129 47.3
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 2.5e-23 114.0 450 26.7
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.3e-23 113.2 299 30.1
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.1e-22 110.9 250 30.8
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 2.4e-21 107.5 72 66.7
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.9e-19 99.8 227 31.3
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 3.5e-17 93.6 198 32.3
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 9.6e-15 85.5 63 61.9
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 2.8e-14 84.0 64 59.4
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 2.8e-14 84.0 83 42.2
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 4.4e-12 76.6 72 48.6
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.1e-10 72.0 123 36.6
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 6.0e-09 66.2 35 77.1
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 7.8e-09 65.9 191 25.1
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 1.7e-08 64.7 51 56.9
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 6.6e-08 62.8 50 62.0
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 2.1e-06 57.8 49 57.1


User provided reference genes

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