Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 1.0e-78 296.6 144 100.0
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 6.5e-65 250.8 145 85.5
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 1.6e-58 229.6 145 77.9
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 2.3e-57 225.7 145 75.9
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 3.8e-57 224.9 145 75.2
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 5.0e-57 224.6 145 75.2
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 1.1e-56 223.4 140 76.4
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 1.9e-56 222.6 145 74.5
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 2.5e-56 222.2 149 76.5
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 3.3e-56 221.9 145 75.2
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 5.6e-56 221.1 145 72.4
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 7.3e-56 220.7 145 74.5
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 9.5e-56 220.3 146 74.7
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 1.2e-55 219.9 146 70.5
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 2.1e-55 219.2 145 72.4
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 2.1e-55 219.2 146 74.7
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 4.7e-55 218.0 146 74.0
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 6.1e-55 217.6 146 74.0
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 1.0e-54 216.9 145 71.0
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 1.4e-54 216.5 147 73.5
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 1.4e-54 216.5 146 74.0
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 1.8e-54 216.1 145 73.1
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 2.3e-54 215.7 146 71.2
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 2.3e-54 215.7 146 72.6
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 2.3e-54 215.7 146 74.0
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 5.2e-54 214.5 146 71.9
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 5.2e-54 214.5 150 74.0
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 6.8e-54 214.2 145 71.7
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 8.9e-54 213.8 146 71.2
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 1.2e-53 213.4 146 70.5
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 1.5e-53 213.0 145 69.7
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 1.5e-53 213.0 145 71.7
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 2.0e-53 212.6 148 73.6
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 4.4e-53 211.5 146 70.5
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 4.4e-53 211.5 145 70.3
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 5.8e-53 211.1 145 70.3
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 5.8e-53 211.1 145 71.0
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 7.5e-53 210.7 145 69.7
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 9.8e-53 210.3 145 71.0
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 9.8e-53 210.3 146 69.2
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 1.3e-52 209.9 146 70.5
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 1.7e-52 209.5 145 71.0
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 2.2e-52 209.1 145 71.7
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 2.9e-52 208.8 145 70.3
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.9e-52 208.8 146 69.9
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 2.9e-52 208.8 145 71.0
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 3.7e-52 208.4 145 71.0
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 3.7e-52 208.4 145 70.3
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 3.7e-52 208.4 145 70.3
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 3.7e-52 208.4 145 69.7
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 4.9e-52 208.0 145 70.3
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 4.9e-52 208.0 146 67.1
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 4.9e-52 208.0 146 67.1
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 6.4e-52 207.6 146 68.5
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 8.3e-52 207.2 146 69.2
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 1.1e-51 206.8 145 69.0
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 1.1e-51 206.8 146 68.5
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 1.4e-51 206.5 146 69.2
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 1.4e-51 206.5 146 67.8
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 2.4e-51 205.7 145 69.7
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 2.4e-51 205.7 146 66.4
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 3.2e-51 205.3 145 67.6
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 4.1e-51 204.9 146 68.5
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.1e-51 204.9 146 67.1
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 5.4e-51 204.5 145 69.0
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 9.2e-51 203.8 145 66.9
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 1.6e-50 203.0 145 66.2
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 2.0e-50 202.6 145 66.9
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 2.7e-50 202.2 145 69.0
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 3.5e-50 201.8 146 68.5
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 3.5e-50 201.8 140 67.1
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 1.0e-49 200.3 146 63.7
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.3e-49 199.9 140 67.1
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.3e-49 199.9 140 67.1
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 1.3e-49 199.9 132 74.2
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 1.3e-49 199.9 145 64.8
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 1.7e-49 199.5 145 66.2
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 3.0e-49 198.7 159 64.2
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 3.0e-49 198.7 145 66.9
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 5.0e-49 198.0 145 63.4
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 5.0e-49 198.0 145 65.5
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.1e-48 196.8 145 66.2
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 1.5e-48 196.4 147 66.0
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 1.9e-48 196.1 145 66.2
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.5e-48 195.7 146 65.8
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 5.6e-48 194.5 170 60.0
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 7.3e-48 194.1 145 62.8
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 9.5e-48 193.7 145 65.5
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 9.5e-48 193.7 146 62.3
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 1.2e-47 193.4 146 65.8
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 1.6e-47 193.0 145 63.4
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 1.1e-46 190.3 184 56.5
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.4e-46 189.9 144 66.0
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 4.0e-46 188.3 145 64.1
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 4.0e-46 188.3 183 55.7
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 2.6e-45 185.7 145 63.4
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 2.9e-44 182.2 145 64.1
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 3.2e-43 178.7 122 71.3
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 7.0e-43 177.6 140 60.0
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 4.6e-42 174.9 124 65.3
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 5.0e-41 171.4 199 47.2
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 6.6e-41 171.0 99 74.7
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 3.3e-40 168.7 150 59.3
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.2e-39 166.8 151 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 1.8e-38 162.9 137 54.7
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 4.0e-38 161.8 145 53.8
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 4.0e-38 161.8 141 56.7
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 1.2e-37 160.2 133 57.9
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 1.2e-34 150.2 103 68.0
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 2.1e-34 149.4 137 51.8
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 4.6e-34 148.3 124 56.5
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.7e-33 146.4 97 72.2
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.3e-33 146.0 113 63.7
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.3e-33 146.0 96 72.9
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 3.3e-32 142.1 105 64.8
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 9.5e-32 140.6 92 68.5
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 4.1e-27 125.2 89 69.7
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 1.2e-21 107.1 111 46.8
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 2.6e-21 105.9 73 64.4
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.4e-20 101.3 67 71.6
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.4e-19 100.1 70 72.9
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.6e-15 86.7 71 62.0
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 5.3e-14 81.6 55 78.2
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 7.1e-11 71.2 60 60.0
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.6e-10 70.1 48 70.8
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.6e-10 70.1 48 70.8
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 3.9e-09 65.5 51 62.7
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 7.4e-08 61.2 41 65.9
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.4e-06 56.2 30 73.3
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 9.0e-06 54.3 39 64.1


User provided reference genes

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