Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.3e-210 736.1 362 100.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.6e-142 509.2 412 64.3
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.2e-137 491.9 412 64.8
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 3.5e-131 472.2 416 62.7
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.3e-130 469.5 261 88.5
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.2e-126 457.2 418 61.0
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-125 453.8 366 65.8
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 4.1e-124 448.7 414 58.7
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 5.4e-124 448.4 414 60.6
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.0e-123 446.4 409 63.1
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 3.0e-122 442.6 414 59.2
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 7.3e-121 438.0 426 58.5
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 2.1e-120 436.4 426 58.9
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 4.7e-120 435.3 331 67.7
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 4.7e-120 435.3 415 58.6
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 8.0e-120 434.5 413 58.1
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.0e-119 434.1 418 57.7
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.4e-119 433.7 302 70.9
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.3e-119 433.0 428 55.8
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.3e-119 433.0 428 55.8
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 5.2e-119 431.8 413 59.6
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.2e-118 430.6 413 57.9
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.2e-118 430.6 408 60.0
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.5e-118 430.3 327 67.0
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.5e-118 430.3 324 67.3
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.6e-118 429.5 410 58.3
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 3.4e-118 429.1 418 57.4
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 5.8e-118 428.3 419 57.3
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 7.5e-118 427.9 340 65.9
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 9.8e-118 427.6 328 67.7
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.7e-117 426.8 408 59.6
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.9e-117 426.0 324 67.0
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 3.7e-117 425.6 327 67.0
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 3.7e-117 425.6 412 55.8
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 8.3e-117 424.5 415 57.6
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 8.3e-117 424.5 404 59.4
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.4e-116 423.7 409 58.7
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.4e-116 422.9 419 56.3
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 3.2e-116 422.5 328 65.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.2e-115 420.6 414 56.3
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 6.0e-115 418.3 399 58.6
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.1e-113 414.1 308 67.5
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 1.1e-113 414.1 415 54.9
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 1.9e-113 413.3 368 59.8
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 7.3e-113 411.4 298 69.5
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 9.5e-113 411.0 378 57.4
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.6e-112 410.2 326 64.7
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.1e-112 409.8 316 66.5
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 2.8e-112 409.5 305 67.9
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 6.2e-112 408.3 415 57.6
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.0e-111 405.6 415 54.7
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.8e-111 404.8 357 61.1
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.8e-111 404.8 357 61.1
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.8e-111 404.8 357 61.1
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.2e-110 404.1 404 55.9
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.0e-110 403.3 318 64.8
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 4.9e-109 398.7 420 55.2
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.1e-108 397.5 328 61.0
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.4e-108 397.1 417 55.6
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 3.2e-108 396.0 423 55.1
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.2e-108 396.0 424 54.2
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.2e-107 394.0 355 60.3
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 2.1e-107 393.3 285 68.8
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.5e-107 392.5 351 61.5
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.3e-106 389.8 351 61.3
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.9e-106 389.0 416 53.6
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 3.9e-106 389.0 402 55.2
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 5.1e-106 388.7 411 54.7
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 5.1e-106 388.7 408 53.9
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 5.1e-106 388.7 408 53.9
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.1e-105 387.5 306 66.3
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.5e-105 387.1 419 53.9
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.9e-105 386.7 415 54.2
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-105 386.7 415 53.3
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 2.5e-105 386.3 412 53.2
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 4.3e-105 385.6 308 63.3
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 5.6e-105 385.2 414 53.9
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 5.6e-105 385.2 414 53.1
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 7.3e-105 384.8 388 54.6
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.1e-104 383.3 427 52.0
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.8e-104 382.9 305 62.0
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.8e-104 382.9 386 57.8
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 4.7e-104 382.1 442 50.7
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.8e-103 380.2 428 51.2
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 4.0e-103 379.0 424 51.4
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 9.9e-102 374.4 322 60.6
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 8.4e-101 371.3 401 52.4
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.9e-100 370.2 402 53.2
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.9e-98 362.5 303 61.1
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.6e-96 357.1 251 72.1
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 8.1e-96 354.8 427 48.7
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.8e-95 353.6 257 69.3
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.4e-95 353.2 304 60.2
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 5.2e-95 352.1 398 51.3
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.6e-94 349.7 303 60.1
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 5.8e-94 348.6 414 48.6
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.4e-92 344.0 328 53.4
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.6e-91 340.5 291 60.8
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 2.1e-91 340.1 291 57.0
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 6.6e-90 335.1 384 53.1
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 9.6e-89 331.3 295 55.6
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 9.6e-89 331.3 313 56.2
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.8e-88 329.7 361 53.5
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.8e-87 327.0 395 48.4
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.4e-87 326.6 292 57.9
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 3.1e-87 326.2 320 54.7
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.2e-85 320.1 277 63.9
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 2.4e-84 316.6 262 61.5
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 2.1e-83 313.5 242 65.7
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 3.5e-83 312.8 245 65.3
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.5e-83 312.8 391 48.3
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 6.7e-82 308.5 363 49.3
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 8.7e-82 308.1 306 51.3
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.6e-81 305.4 303 50.8
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.7e-80 302.8 306 50.7
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 8.1e-80 301.6 236 66.1
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.2e-77 293.5 433 44.8
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 3.8e-77 292.7 247 62.3
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.1e-76 291.2 268 57.8
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.2e-76 289.3 303 49.5
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 5.3e-71 272.3 215 66.0
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.2e-70 271.2 157 82.8
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.5e-70 270.8 346 48.8
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 3.4e-70 269.6 391 44.2
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 2.2e-69 266.9 275 48.7
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.9e-69 266.5 261 55.6
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.4e-68 264.2 215 65.6
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.6e-67 260.8 257 56.8
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 3.5e-67 259.6 272 56.6
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.0e-61 241.5 304 44.7
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 7.2e-60 235.3 220 58.2
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 5.1e-58 229.2 301 44.2
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.5e-57 227.6 270 50.0
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.5e-57 227.6 261 52.5
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.7e-57 225.7 142 77.5
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 4.1e-55 219.5 251 50.6
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 6.9e-55 218.8 151 69.5
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 9.1e-55 218.4 244 51.6
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 1.1e-52 211.5 144 70.8
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 7.2e-52 208.8 164 67.1
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.6e-51 207.6 204 53.9
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 6.7e-50 202.2 191 56.0
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.8e-47 194.1 173 59.0
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.0e-46 190.7 174 54.0
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.7e-45 187.6 195 59.0
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.1e-43 180.6 215 48.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.7e-43 179.5 101 80.2
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 6.1e-43 179.1 99 81.8
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.1e-41 174.9 149 58.4
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.1e-39 168.3 159 55.3
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 1.4e-39 167.9 101 76.2
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 3.1e-39 166.8 174 51.1
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 5.3e-39 166.0 210 42.9
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 9.1e-39 165.2 282 34.8
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.1e-36 158.3 137 61.3
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-36 157.5 163 57.1
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.2e-35 154.8 191 49.7
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 1.6e-35 154.5 102 69.6
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.7e-35 153.7 80 88.8
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.2e-32 144.1 154 48.7
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.3e-29 134.8 365 33.4
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.7e-29 134.4 232 37.9
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.2e-29 134.0 274 35.0
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 9.4e-28 128.6 148 49.3
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.0e-26 123.2 70 85.7
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 6.8e-26 122.5 117 48.7
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 7.0e-23 112.5 102 52.9
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 7.2e-20 102.4 272 29.8
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 7.2e-20 102.4 158 44.9
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.6e-19 101.3 53 81.1
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 2.6e-17 94.0 68 64.7
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.1e-15 87.0 179 36.3
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.7e-13 81.3 49 71.4
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.7e-13 81.3 122 36.1
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 2.9e-13 80.5 45 80.0
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 5.0e-13 79.7 161 37.3
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 6.6e-13 79.3 46 78.3
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 7.3e-12 75.9 121 35.5
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 2.8e-11 73.9 43 88.4
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.0e-10 72.0 165 35.8
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 3.0e-10 70.5 48 70.8
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 6.4e-08 62.8 41 80.5


User provided reference genes

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