Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.5e-281 972.2 519 100.0
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.9e-211 738.0 529 78.4
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 4.0e-205 718.4 527 75.9
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 2.2e-203 712.6 454 83.3
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.1e-202 710.3 550 72.9
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 2.4e-202 709.1 460 82.6
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 3.5e-201 705.3 528 74.4
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 6.0e-201 704.5 532 73.7
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 2.3e-200 702.6 508 76.2
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 8.6e-200 700.7 489 76.5
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.9e-199 699.5 528 75.0
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 1.9e-199 699.5 531 72.9
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 3.3e-199 698.7 462 80.3
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 4.3e-199 698.4 460 81.1
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 9.5e-199 697.2 460 81.1
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.6e-198 696.4 460 81.1
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 3.6e-198 695.3 502 75.7
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 4.7e-198 694.9 521 74.1
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 4.7e-198 694.9 519 74.2
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.8e-197 693.0 512 74.2
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.8e-197 693.0 477 78.0
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 2.3e-197 692.6 529 72.6
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 3.1e-197 692.2 537 72.4
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 3.4e-196 688.7 463 79.5
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 5.8e-196 688.0 517 73.1
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 7.6e-196 687.6 432 83.3
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 7.6e-196 687.6 531 71.8
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 9.9e-196 687.2 442 82.4
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.3e-195 686.8 461 79.6
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-195 686.8 484 77.3
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.3e-195 686.8 524 72.7
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 1.7e-195 686.4 459 79.3
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 2.2e-195 686.0 460 78.9
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 1.1e-194 683.7 531 72.9
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 1.4e-194 683.3 529 71.3
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 1.4e-194 683.3 462 78.8
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.6e-193 679.9 517 72.5
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.6e-193 679.9 485 76.5
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 6.0e-193 677.9 484 76.2
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 6.0e-193 677.9 447 80.3
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.0e-192 677.2 459 78.9
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 1.0e-192 677.2 449 80.0
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-192 676.8 484 76.0
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 2.3e-192 676.0 458 78.8
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 3.0e-192 675.6 514 73.5
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 3.0e-192 675.6 436 81.9
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 5.1e-192 674.9 435 82.1
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 6.6e-192 674.5 468 77.8
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 8.6e-192 674.1 460 78.5
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 8.6e-192 674.1 443 81.5
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 1.1e-191 673.7 507 72.6
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 4.3e-191 671.8 520 71.9
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 4.3e-191 671.8 518 71.6
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 4.3e-191 671.8 519 72.3
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.6e-191 671.4 471 76.9
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 1.2e-190 670.2 461 77.4
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.2e-190 670.2 462 77.7
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 1.6e-190 669.8 460 77.4
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 2.1e-190 669.5 462 77.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 2.1e-190 669.5 462 77.5
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 2.1e-190 669.5 460 78.0
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 2.8e-190 669.1 460 77.2
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 4.7e-190 668.3 460 77.8
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 4.7e-190 668.3 454 78.2
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 6.2e-190 667.9 464 77.4
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 8.1e-190 667.5 431 81.4
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 8.1e-190 667.5 475 75.4
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 1.1e-189 667.2 463 76.9
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.8e-189 666.4 441 79.8
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 5.2e-189 664.8 458 77.9
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 5.2e-189 664.8 462 76.8
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 6.8e-189 664.5 529 70.1
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 8.9e-189 664.1 460 76.5
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 8.9e-189 664.1 552 68.5
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 1.2e-188 663.7 518 71.4
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 2.0e-188 662.9 459 77.3
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 2.6e-188 662.5 449 79.1
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 2.6e-188 662.5 491 73.7
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.6e-188 662.5 440 79.8
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 5.8e-188 661.4 433 80.8
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 7.6e-188 661.0 486 73.9
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 3.8e-187 658.7 458 77.5
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 4.9e-187 658.3 449 78.8
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.6e-185 653.3 447 77.9
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 1.0e-184 650.6 458 75.3
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 3.0e-184 649.0 456 75.0
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 5.1e-184 648.3 461 76.4
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 6.6e-184 647.9 475 74.3
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 8.7e-184 647.5 446 77.1
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 8.7e-184 647.5 446 77.1
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.5e-183 646.7 511 71.0
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 2.5e-183 646.0 406 82.8
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 5.6e-183 644.8 481 74.2
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 9.6e-183 644.0 417 81.8
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.1e-182 642.9 405 82.2
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 3.6e-182 642.1 446 76.5
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 4.8e-182 641.7 463 74.7
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 4.0e-181 638.6 487 71.7
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 2.6e-180 636.0 425 76.9
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 4.4e-180 635.2 436 76.4
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.3e-179 633.6 448 75.0
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 2.4e-178 629.4 434 76.3
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 3.5e-177 625.5 436 78.7
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.0e-176 624.0 432 77.1
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.3e-176 622.9 436 75.2
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.9e-175 619.8 421 77.0
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 2.1e-174 616.3 475 69.9
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.7e-169 599.4 483 67.9
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.5e-167 593.6 437 73.2
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 4.8e-166 588.6 424 71.7
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 3.1e-165 585.9 511 67.5
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 2.7e-161 572.8 465 68.0
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 5.1e-160 568.5 421 75.5
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 1.3e-152 543.9 438 66.0
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 1.3e-152 543.9 438 66.0
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 8.2e-142 508.1 417 63.8
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 4.2e-138 495.7 423 62.2
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.8e-136 490.3 416 62.3
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 5.7e-135 485.3 378 69.0
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.1e-133 481.1 376 72.3
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 9.7e-127 458.0 367 65.7
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 4.4e-119 432.6 380 63.9
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 3.6e-105 386.3 230 89.1
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 5.0e-99 365.9 414 49.3
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 7.3e-90 335.5 418 48.6
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 5.4e-85 319.3 282 64.2
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.1e-81 307.4 332 56.3
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 2.8e-73 280.4 456 39.5
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 8.9e-72 275.4 236 69.9
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 9.9e-71 271.9 386 38.9
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 6.0e-68 262.7 236 60.6
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 3.9e-67 260.0 156 89.7
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.6e-65 253.4 419 35.6
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 7.6e-63 245.7 376 38.3
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 7.1e-53 212.6 162 68.5
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 3.5e-52 210.3 453 36.2
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 5.3e-48 196.4 230 52.2
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 4.1e-40 170.2 126 68.3
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.6e-36 158.3 144 63.2
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.2e-30 137.9 107 68.2
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 5.1e-27 126.7 86 72.1
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 6.7e-27 126.3 109 59.6
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 1.8e-24 118.2 97 71.1
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 2.3e-19 101.3 104 56.7
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.8e-16 91.7 387 24.0
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.1e-12 78.2 68 67.6
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 2.3e-11 74.7 221 28.5
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 3.7e-09 67.4 423 24.3


User provided reference genes

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