Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0796 Trochodendron aralioides HOM05D007913 ORTHO05D009599 1.2e-55 219.5 111 100.0
TAR371G0046 Trochodendron aralioides HOM05D007913 ORTHO05D009599 3.8e-28 128.3 112 61.6
TAR629G2111 Trochodendron aralioides HOM05D007913 ORTHO05D009599 4.9e-28 127.9 110 62.7
Nn4g23816 Nelumbo nucifera HOM05D007913 ORTHO05D009599 1.7e-20 102.8 122 50.8
MBI16_g11028_MAGBIO Magnolia biondii HOM05D007913 ORTHO05D009599 8.4e-20 100.5 127 44.9
Dinv04476 Davidia involucrata HOM05D007913 ORTHO05D009599 5.5e-19 97.8 111 54.1
MBI10_g16032_MAGBIO Magnolia biondii HOM05D007913 ORTHO05D009599 9.3e-19 97.1 130 44.6
Nn3g17821 Nelumbo nucifera HOM05D007913 ORTHO05D009599 2.1e-18 95.9 116 51.7
Hma1.2p1_0061F.1_g034050 Hydrangea macrophylla HOM05D007913 ORTHO05D009599 5.7e-16 87.8 116 49.1
Dinv21098 Davidia involucrata HOM05D007913 ORTHO05D009599 7.4e-16 87.4 87 55.2
Thecc.02G356200 Theobroma cacao HOM05D007913 ORTHO05D009599 6.3e-15 84.3 109 53.2
Atru.chr11.1276 Acer truncatum HOM05D007913 ORTHO05D009599 2.4e-14 82.4 115 47.8
Ciclev10033073m.g Citrus clementina HOM05D007913 ORTHO05D009599 2.4e-14 82.4 123 51.2
RcHm_v2.0_Chr4g0435341 Rosa chinensis HOM05D007913 ORTHO05D009599 2.4e-14 82.4 107 53.3
QL01p043366 Quercus lobata HOM05D007913 ORTHO05D009599 3.4e-13 78.6 120 49.2
Actinidia14885 Actinidia chinensis HOM05D007913 ORTHO05D009599 4.5e-13 78.2 115 46.1
Nitab4.5_0003330g0030 Nicotiana tabacum HOM05D007913 ORTHO05D009599 5.9e-13 77.8 110 43.6
Cc00_g12370 Coffea canephora HOM05D007913 ORTHO05D009599 7.6e-13 77.4 121 45.5
Rhsim09G0108800 Rhododendron simsii HOM05D007913 ORTHO05D009599 7.6e-13 77.4 118 45.8
Prupe.1G309800 Prunus persica HOM05D007913 ORTHO05D009599 1.3e-12 76.6 114 48.2
COL.COLO4_07914 Corchorus olitorius HOM05D007913 ORTHO05D009599 1.7e-12 76.3 112 47.3
Oeu009783.1 Olea europaea HOM05D007913 ORTHO05D009599 1.7e-12 76.3 110 48.2
DCAR_030070 Daucus carota HOM05D007913 ORTHO05D009599 3.8e-12 75.1 108 48.1
Nitab4.5_0000874g0150 Nicotiana tabacum HOM05D007913 ORTHO05D009599 1.1e-11 73.6 114 45.6
Oeu039264.1 Olea europaea HOM05D007913 ORTHO05D009599 1.4e-11 73.2 114 46.5
PGSC0003DMG400014558 Solanum tuberosum HOM05D007913 ORTHO05D009599 1.9e-11 72.8 116 43.1
Oeu027679.1 Olea europaea HOM05D007913 ORTHO05D009599 2.5e-11 72.4 113 44.2
Oeu027681.1 Olea europaea HOM05D007913 ORTHO05D009599 2.5e-11 72.4 113 44.2
Rhsim09G0108600 Rhododendron simsii HOM05D007913 ORTHO05D009599 9.4e-11 70.5 114 47.4
Migut.E00331 Erythranthe guttata HOM05D007913 ORTHO05D009599 1.2e-10 70.1 112 42.9
Nitab4.5_0000874g0170 Nicotiana tabacum HOM05D007913 ORTHO05D009599 1.6e-10 69.7 113 43.4
Manes.14G101600 Manihot esculenta HOM05D007913 ORTHO05D009599 2.7e-10 68.9 95 48.4
Aqoxy3G00317 Aquilegia oxysepala HOM05D007913 ORTHO05D009599 3.6e-10 68.6 107 48.6
MSTRG.2240 Avicennia marina HOM05D007913 ORTHO05D009599 3.6e-10 68.6 113 41.6
Sopen05g005290 Solanum pennellii HOM05D007913 ORTHO05D009599 3.6e-10 68.6 118 41.5
MSTRG.2241 Avicennia marina HOM05D007913 ORTHO05D009599 4.6e-10 68.2 115 41.7
FvH4_4g27520 Fragaria vesca HOM05D007913 ORTHO05D009599 7.9e-10 67.4 109 44.0
FAN12G2484 Fragaria x ananassa HOM05D007913 ORTHO05D009599 7.9e-10 67.4 109 44.0
FAN12G3451 Fragaria x ananassa HOM05D007913 ORTHO05D009599 7.9e-10 67.4 109 44.0
Nitab4.5_0003330g0020 Nicotiana tabacum HOM05D007913 ORTHO05D009599 7.9e-10 67.4 119 42.0
FAN22G1199 Fragaria x ananassa HOM05D007913 ORTHO05D009599 1.4e-09 66.6 109 43.1
TAR362G0928 Trochodendron aralioides HOM05D007913 ORTHO05D009599 1.8e-09 66.2 59 55.9
MSTRG.13523 Avicennia marina HOM05D007913 ORTHO05D009599 2.3e-09 65.9 109 45.0
Cfa000683 Carpinus fangiana HOM05D007913 ORTHO05D009599 3.0e-09 65.5 107 48.6
FAN07G1066 Fragaria x ananassa HOM05D007913 ORTHO05D009599 3.0e-09 65.5 109 42.2
Potri.010G125900 Populus trichocarpa HOM05D007913 ORTHO05D009599 3.0e-09 65.5 110 46.4
Potri.008G119900 Populus trichocarpa HOM05D013794 ORTHO05D009599 3.9e-09 65.1 94 50.0
Nitab4.5_0000057g0320 Nicotiana tabacum HOM05D007913 ORTHO05D009599 5.1e-09 64.7 113 40.7
Actinidia18937 Actinidia chinensis HOM05D010627 ORTHO05D009599 1.5e-08 63.2 106 44.3
CiPaw.16G064300 Carya illinoinensis HOM05D007913 ORTHO05D009599 1.5e-08 63.2 123 37.4
MELO3C012240.2 Cucumis melo HOM05D022913 ORTHO05D025094 1.5e-08 63.2 101 43.6
Thecc.02G356100 Theobroma cacao HOM05D013794 ORTHO05D009599 1.5e-08 63.2 114 43.9
Duzib268G1152 Durio zibethinus HOM05D013794 ORTHO05D009599 1.9e-08 62.8 114 42.1
Hma1.2p1_1001F.1_g246480 Hydrangea macrophylla HOM05D007913 ORTHO05D009599 1.9e-08 62.8 80 51.2
Peaxi162Scf00382g00026 Petunia axillaris HOM05D007913 ORTHO05D009599 1.9e-08 62.8 109 42.2
vmacro16450 Vaccinium macrocarpon HOM05D010627 ORTHO05D009599 1.9e-08 62.8 113 41.6
vmacro23289 Vaccinium macrocarpon HOM05D007913 ORTHO05D009599 1.9e-08 62.8 117 41.9
Duzib251G0161 Durio zibethinus HOM05D013794 ORTHO05D009599 3.3e-08 62.0 115 46.1
MD13G1042800 Malus domestica HOM05D007913 ORTHO05D009599 4.3e-08 61.6 114 39.5
MSTRG.13522 Avicennia marina HOM05D007913 ORTHO05D009599 5.7e-08 61.2 106 38.7
Sabra08G0090900 Salix brachista HOM05D013794 ORTHO05D009599 5.7e-08 61.2 112 42.0
SalBow8G2445 Salvia bowleyana HOM05D007913 ORTHO05D009599 5.7e-08 61.2 83 48.2
Haze_06126 Corylus avellana HOM05D007913 ORTHO05D009599 7.4e-08 60.8 118 44.1
CSS0025071 Camellia sinensis var. sinensis HOM05D007913 ORTHO05D009599 9.7e-08 60.5 86 47.7
Peaxi162Scf00382g00033 Petunia axillaris HOM05D007913 ORTHO05D009599 9.7e-08 60.5 106 42.5
Actinidia35085 Actinidia chinensis HOM05D010627 ORTHO05D013125 1.3e-07 60.1 106 42.5
MSTRG.13526 Avicennia marina HOM05D007913 ORTHO05D009599 1.3e-07 60.1 108 43.5
Duzib248G0949 Durio zibethinus HOM05D013794 ORTHO05D009599 1.3e-07 60.1 92 45.7
CsaV3_5G034250 Cucumis sativus L. HOM05D022913 ORTHO05D025094 3.7e-07 58.5 101 41.6
QL01p043322 Quercus lobata HOM05D013794 ORTHO05D009599 3.7e-07 58.5 107 43.0
Rhsim12G0143600 Rhododendron simsii HOM05D007913 ORTHO05D009599 3.7e-07 58.5 88 45.5
Dinv21097 Davidia involucrata HOM05D007913 ORTHO05D009599 4.8e-07 58.2 73 45.2
Thecc.03G034200 Theobroma cacao HOM05D021252 ORTHO05D012395 4.8e-07 58.2 113 38.9
Ciclev10033117m.g Citrus clementina HOM05D013794 ORTHO05D009599 6.3e-07 57.8 108 40.7
Haze_06128 Corylus avellana HOM05D003281 ORTHO05D004128 6.3e-07 57.8 108 48.1
Migut.E00332 Erythranthe guttata HOM05D007913 ORTHO05D009599 6.3e-07 57.8 116 42.2
vmacro23288 Vaccinium macrocarpon HOM05D007913 ORTHO05D009599 6.3e-07 57.8 119 41.2
Nitab4.5_0006400g0040 Nicotiana tabacum HOM05D007913 ORTHO05D009599 8.2e-07 57.4 88 40.9
DCAR_030149 Daucus carota HOM05D007913 ORTHO05D009599 1.1e-06 57.0 106 43.4
ClCG05G022780 Citrullus lanatus HOM05D022913 ORTHO05D025094 1.4e-06 56.6 106 39.6
Atru.chr11.1275 Acer truncatum HOM05D007913 ORTHO05D009599 1.8e-06 56.2 115 44.3
CSS0042752 Camellia sinensis var. sinensis HOM05D052657 ORTHO05D016853 2.4e-06 55.8 114 41.2
MSTRG.13525 Avicennia marina HOM05D007913 ORTHO05D009599 3.1e-06 55.5 69 44.9
MSTRG.13524 Avicennia marina HOM05D007913 ORTHO05D009599 4.1e-06 55.1 121 38.8
Manes.05G137750 Manihot esculenta HOM05D021252 ORTHO05D012395 4.1e-06 55.1 118 39.0
CSS0038924 Camellia sinensis var. sinensis HOM05D052657 ORTHO05D016853 5.3e-06 54.7 114 41.2
CANSAT01G0283 Cannabis sativa HOM05D007913 ORTHO05D009599 6.9e-06 54.3 115 35.7
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 6.9e-06 54.3 108 38.9
CiPaw.16G064400 Carya illinoinensis HOM05D007913 ORTHO05D009599 6.9e-06 54.3 129 37.2
Dinv09801 Davidia involucrata HOM05D007913 ORTHO05D009599 6.9e-06 54.3 76 47.4
ATR0624G007 Amborella trichopoda HOM05D025946 ORTHO05D066055 9.1e-06 53.9 117 39.3


User provided reference genes

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