Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.5e-197 691.4 351 100.0
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.6e-40 169.9 172 53.5
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.3e-39 167.2 142 55.6
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 2.0e-38 164.1 172 51.2
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.1e-36 158.3 184 45.7
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 3.1e-36 156.8 182 46.2
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 4.1e-36 156.4 185 46.5
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.1e-36 156.4 177 49.2
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 7.0e-36 155.6 176 46.6
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.7e-35 153.7 177 47.5
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 5.9e-35 152.5 179 45.8
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 7.7e-35 152.1 177 46.9
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.7e-34 151.0 189 45.0
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 3.8e-34 149.8 177 46.3
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.0e-34 149.4 177 45.8
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 8.5e-34 148.7 177 45.8
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.1e-33 148.3 180 46.1
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 7.2e-33 145.6 183 43.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.2e-32 144.8 181 43.1
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.6e-32 144.4 176 43.2
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.6e-32 144.4 182 43.4
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.6e-32 144.4 171 45.0
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.6e-32 144.4 172 47.1
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.6e-32 144.4 180 42.8
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 2.1e-32 144.1 169 43.8
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 2.1e-32 144.1 185 43.2
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 2.7e-32 143.7 171 44.4
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 4.7e-32 142.9 180 42.2
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 1.4e-31 141.4 170 47.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.4e-31 141.4 180 44.4
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 1.8e-31 141.0 180 42.8
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 3.0e-31 140.2 180 41.1
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 6.8e-31 139.0 180 41.7
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 8.8e-31 138.7 186 41.9
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 8.8e-31 138.7 175 45.1
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.2e-30 138.3 195 39.5
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.2e-30 138.3 174 42.5
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 2.0e-30 137.5 177 42.9
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 2.0e-30 137.5 179 40.2
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 2.6e-30 137.1 170 44.7
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 9.8e-30 135.2 143 51.7
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 1.7e-29 134.4 174 43.1
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.7e-29 134.4 164 45.1
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.7e-29 134.4 175 41.1
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 2.2e-29 134.0 163 44.2
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 2.2e-29 134.0 179 40.2
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 4.9e-29 132.9 173 40.5
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 4.9e-29 132.9 179 40.8
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 6.3e-29 132.5 171 40.4
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.8e-28 131.0 174 39.1
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 3.1e-28 130.2 170 43.5
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 3.1e-28 130.2 162 44.4
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.0e-27 127.5 103 57.3
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.0e-27 127.5 103 57.3
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 4.5e-27 126.3 164 38.4
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.3e-26 124.8 103 55.3
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.3e-26 124.0 165 43.0
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.1e-25 121.7 164 37.2
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 1.5e-25 121.3 168 40.5
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.9e-25 120.9 165 38.8
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 4.2e-25 119.8 167 37.1
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 9.5e-25 118.6 174 38.5
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 2.8e-24 117.1 178 39.3
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 3.6e-24 116.7 171 36.3
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 8.0e-24 115.5 152 41.4
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.4e-23 114.8 165 37.0
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 4.0e-23 113.2 175 36.6
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 6.8e-23 112.5 172 40.7
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 6.8e-23 112.5 165 38.2
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 8.9e-23 112.1 134 42.5
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.5e-22 111.3 106 49.1
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.0e-22 110.9 114 50.9
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 2.6e-22 110.5 181 35.9
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 2.6e-22 110.5 168 36.9
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.6e-22 110.5 166 38.0
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.4e-22 109.8 102 49.0
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 4.4e-22 109.8 171 37.4
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 9.8e-22 108.6 165 36.4
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.9e-21 107.1 195 32.8
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 4.9e-21 106.3 190 31.6
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 6.4e-21 105.9 105 49.5
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.4e-20 104.8 163 37.4
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.2e-20 103.6 164 36.0
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 7.0e-20 102.4 178 33.1
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 7.0e-20 102.4 179 33.5
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 7.0e-20 102.4 179 33.5
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 9.2e-20 102.1 162 34.6
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 9.2e-20 102.1 171 33.3
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.2e-19 101.7 174 32.8
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.6e-19 101.3 177 32.2
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.6e-19 101.3 170 32.4
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 3.5e-19 100.1 165 31.5
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.6e-19 99.8 160 35.6
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 5.9e-19 99.4 186 34.9
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 7.8e-19 99.0 162 34.0
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 7.8e-19 99.0 162 34.0
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 1.0e-18 98.6 173 33.5
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.3e-18 98.2 167 34.7
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.9e-18 97.1 170 34.1
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.9e-18 97.1 163 34.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 2.9e-18 97.1 163 33.7
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 3.9e-18 96.7 160 33.8
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 3.9e-18 96.7 161 34.2
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 5.0e-18 96.3 158 34.2
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 5.0e-18 96.3 163 33.7
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-17 95.1 161 33.5
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.1e-17 95.1 161 33.5
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.5e-17 94.7 161 33.5
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.5e-17 94.7 178 30.9
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 3.3e-17 93.6 178 31.5
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 3.3e-17 93.6 158 34.2
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 5.6e-17 92.8 178 30.9
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 8.0e-16 89.0 169 32.5
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 2.2e-13 80.9 198 25.3
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.0e-10 72.0 171 27.5
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.1e-09 68.6 91 39.6
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.4e-07 61.6 51 49.0


User provided reference genes

Program Settings