Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 2359.7 1260 100.0
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1462.6 1315 61.7
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1394.4 1477 56.4
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1379.4 1272 60.4
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1342.8 1166 63.0
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1323.9 1309 56.8
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1313.9 1287 58.8
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 0.0e+00 1290.4 1319 56.5
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1273.5 1275 56.1
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1269.2 1301 57.0
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1262.7 1324 55.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1260.7 1323 54.6
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1249.6 1344 53.8
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1245.7 1255 56.1
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1241.5 1363 52.8
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 0.0e+00 1223.8 1279 55.7
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1219.9 1290 54.0
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1214.5 1271 55.2
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1208.0 1337 52.6
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1204.5 1265 54.9
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1190.3 1356 51.6
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1175.6 1289 52.4
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1172.5 1310 53.2
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1167.9 1322 51.6
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1167.5 1281 54.2
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1163.7 1306 52.5
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 1163.3 1369 50.7
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1161.0 1314 52.5
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1161.0 1316 51.4
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1156.0 1309 51.9
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1155.6 1343 50.9
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1154.8 1307 52.0
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1153.3 1002 61.4
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1147.5 1308 51.8
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1142.5 1323 51.5
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 0.0e+00 1136.3 1214 54.9
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1135.9 1002 62.3
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1130.9 1308 51.2
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1130.2 1308 51.1
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1127.5 1320 50.4
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 0.0e+00 1127.1 1299 51.3
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1126.3 1312 51.1
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1120.5 1199 54.5
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 0.0e+00 1110.1 1331 48.3
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1108.6 1308 50.4
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 0.0e+00 1104.7 1218 52.8
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1103.2 1183 55.0
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1100.1 1164 54.1
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1098.6 1281 51.7
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 0.0e+00 1097.4 1327 48.2
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1097.0 1138 55.2
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1096.6 1201 52.7
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1096.6 1279 50.9
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1095.9 1289 51.6
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1093.2 1327 49.3
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 0.0e+00 1089.7 1324 48.2
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 0.0e+00 1085.1 1277 50.5
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1083.6 1274 50.3
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 0.0e+00 1080.9 991 59.8
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1080.9 1279 52.5
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 0.0e+00 1077.4 1382 48.3
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 0.0e+00 1075.1 1317 48.3
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 4.3e-311 1071.6 1371 47.6
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.2e-310 1069.3 1134 54.4
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 2.1e-308 1062.8 1283 50.0
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 2.1e-308 1062.8 1277 49.9
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 6.7e-307 1057.7 1057 56.5
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 8.8e-307 1057.4 1275 49.8
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 7.5e-306 1054.3 1331 47.0
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 9.7e-306 1053.9 1295 48.3
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 8.2e-305 1050.8 1279 50.0
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 5.3e-304 1048.1 1365 46.3
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 7.0e-304 1047.7 1280 50.0
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 3.8e-302 1042.0 1289 48.2
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 1.5e-301 1040.0 1284 48.3
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 2.1e-300 1036.2 1283 49.0
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 4.7e-300 1035.0 1282 48.9
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 8.0e-300 1034.2 1292 48.3
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.4e-299 1033.5 1283 48.9
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 1.8e-299 1033.1 1284 48.9
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 1.8e-299 1033.1 1284 48.9
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 2.3e-299 1032.7 1284 48.9
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 6.8e-299 1031.2 1151 52.6
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.1e-296 1023.8 1266 49.6
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 4.5e-295 1018.5 1578 43.7
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 8.9e-291 1004.2 1155 51.1
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.6e-287 993.4 1283 48.2
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.7e-286 989.9 1166 51.3
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.9e-277 959.9 1215 49.0
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 9.5e-277 957.6 987 54.5
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.7e-271 939.5 1144 48.8
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.0e-262 911.0 1294 44.5
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 3.0e-262 909.4 1294 45.3
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.5e-261 907.1 1340 43.9
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 4.3e-261 905.6 1054 49.7
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 7.6e-258 894.8 1364 43.5
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 9.9e-250 867.8 1323 42.8
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.2e-239 834.3 550 76.0
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 9.6e-237 824.7 1292 41.0
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.5e-231 806.2 1292 41.6
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.5e-226 790.8 991 47.9
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.0e-226 790.4 1263 41.7
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 7.7e-218 761.9 961 47.9
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.3e-214 750.4 513 73.3
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.7e-198 695.7 522 66.9
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.7e-169 601.3 999 38.7
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 3.9e-161 573.5 1266 33.2
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 2.9e-156 557.4 605 51.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 1.3e-148 531.9 1345 31.8
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 8.2e-111 406.4 989 33.2
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.0e-110 404.1 667 39.3
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.0e-81 308.1 246 64.2
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.9e-75 288.9 311 54.0
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 1.3e-60 239.6 178 68.0
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.1e-59 236.5 173 67.1
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-45 189.5 236 43.6
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 6.6e-44 184.1 132 71.2
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.4e-41 176.4 601 27.8
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.9e-30 139.4 124 58.1
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.7e-29 135.6 106 62.3
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 1.5e-27 129.8 83 69.9
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.7e-26 124.8 425 30.4
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 6.2e-26 124.4 240 34.6
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.8e-25 122.9 121 55.4
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.2e-25 121.3 97 64.9
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 8.4e-23 114.0 130 56.9
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.2e-22 112.1 106 58.5
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.0e-20 107.1 125 46.4
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.1e-18 97.4 120 47.5
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 5.3e-17 94.7 110 46.4
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.3e-17 94.7 125 46.4
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 2.9e-15 89.0 70 65.7
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.4e-14 86.7 76 56.6
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 9.3e-14 84.0 175 36.0
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 3.1e-09 68.9 206 32.5
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.2e-08 67.0 86 38.4
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 2.6e-08 65.9 47 63.8
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.2e-07 62.8 58 51.7
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 1.9e-06 59.7 56 50.0
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 7.1e-06 57.8 110 35.5


User provided reference genes

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