Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 6.9e-96 354.0 180 100.0
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 8.0e-44 181.0 169 59.8
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.4e-40 169.5 127 71.7
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.1e-40 168.7 127 70.9
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 7.0e-40 167.9 143 65.7
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 5.9e-39 164.9 136 64.0
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 1.0e-38 164.1 136 69.9
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 1.3e-38 163.7 135 64.4
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.9e-38 162.5 127 69.3
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 1.9e-37 159.8 127 64.6
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 2.5e-37 159.5 130 65.4
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 3.2e-37 159.1 123 65.9
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 3.2e-37 159.1 137 64.2
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 5.5e-37 158.3 132 62.9
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 7.2e-37 157.9 128 66.4
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 7.2e-37 157.9 133 63.2
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 9.4e-37 157.5 127 65.4
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 3.6e-36 155.6 126 66.7
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.6e-36 155.6 144 59.0
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 4.7e-36 155.2 131 62.6
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 6.1e-36 154.8 107 72.9
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.0e-35 154.1 122 68.9
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 2.3e-35 152.9 137 65.0
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 2.3e-35 152.9 130 63.1
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.0e-35 152.5 92 81.5
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 3.0e-35 152.5 117 66.7
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 4.0e-35 152.1 137 64.2
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.8e-35 151.4 125 64.8
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.8e-35 151.4 125 64.8
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.2e-34 150.6 117 65.8
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.0e-34 149.8 135 63.0
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 2.6e-34 149.4 130 63.8
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 3.4e-34 149.1 136 61.0
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 5.7e-34 148.3 90 82.2
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 7.5e-34 147.9 128 62.5
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 1.3e-33 147.1 132 62.9
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.7e-33 146.7 128 62.5
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 2.8e-33 146.0 125 63.2
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 3.7e-33 145.6 124 64.5
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 4.8e-33 145.2 128 61.7
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 6.3e-33 144.8 110 62.7
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 8.3e-33 144.4 122 64.8
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.1e-32 144.1 123 62.6
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.4e-32 143.7 98 66.3
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.8e-32 143.3 126 58.7
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.1e-32 142.5 130 62.3
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 7.0e-32 141.4 103 70.9
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 7.0e-32 141.4 94 71.3
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 7.0e-32 141.4 94 71.3
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 7.0e-32 141.4 126 58.7
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 2.7e-31 139.4 132 60.6
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 3.5e-31 139.0 133 59.4
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 3.5e-31 139.0 135 52.6
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 5.9e-31 138.3 87 77.0
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 1.0e-30 137.5 92 73.9
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 2.3e-30 136.3 122 59.0
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 2.9e-30 136.0 139 54.7
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 2.9e-30 136.0 131 57.3
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 2.9e-30 136.0 121 60.3
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.8e-30 135.6 115 63.5
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 5.0e-30 135.2 96 71.9
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 6.5e-30 134.8 135 56.3
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 6.5e-30 134.8 90 74.4
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 8.6e-30 134.4 116 61.2
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.1e-29 134.0 96 69.8
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.1e-29 134.0 96 69.8
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.1e-29 134.0 96 69.8
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.9e-29 133.3 122 60.7
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 2.5e-29 132.9 122 62.3
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 3.2e-29 132.5 96 67.7
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 3.2e-29 132.5 90 72.2
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 3.2e-29 132.5 135 54.1
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 5.5e-29 131.7 106 65.1
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 5.5e-29 131.7 104 63.5
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 9.5e-29 131.0 90 72.2
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 1.6e-28 130.2 92 71.7
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 2.8e-28 129.4 96 70.8
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 2.8e-28 129.4 96 70.8
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 2.8e-28 129.4 96 70.8
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 2.8e-28 129.4 96 70.8
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 2.8e-28 129.4 90 72.2
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.6e-28 129.0 129 55.8
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 6.1e-28 128.3 92 68.5
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 1.0e-27 127.5 90 71.1
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.0e-27 127.5 92 70.7
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 1.0e-27 127.5 90 71.1
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 1.0e-27 127.5 90 71.1
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 1.4e-27 127.1 92 68.5
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.8e-27 126.7 99 65.7
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 3.0e-27 125.9 89 68.5
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 3.0e-27 125.9 100 63.0
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 4.0e-27 125.6 92 69.6
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 4.0e-27 125.6 92 69.6
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 8.8e-27 124.4 120 58.3
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 8.8e-27 124.4 90 66.7
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 1.5e-26 123.6 87 69.0
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 2.6e-26 122.9 132 51.5
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 2.6e-26 122.9 122 53.3
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 7.5e-26 121.3 137 46.7
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 9.8e-26 120.9 94 59.6
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 9.8e-26 120.9 131 52.7
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.7e-25 120.2 81 70.4
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 2.8e-25 119.4 96 60.4
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 3.1e-24 115.9 84 64.3
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 4.5e-23 112.1 87 59.8
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 1.1e-21 107.5 78 65.4
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.5e-21 107.1 81 69.1
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 1.5e-21 107.1 84 61.9
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 4.3e-21 105.5 94 54.3
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 5.6e-21 105.1 102 57.8
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 2.8e-20 102.8 106 52.8
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 4.7e-20 102.1 143 44.8
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.3e-19 99.8 128 46.1
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 3.4e-18 95.9 81 58.0
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 5.7e-18 95.1 105 57.1
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 3.7e-17 92.4 67 70.1
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 1.8e-16 90.1 131 46.6
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.4e-16 89.7 97 57.7
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 1.6e-15 87.0 70 62.9
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 2.7e-15 86.3 68 64.7
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 2.3e-14 83.2 58 67.2
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 2.5e-13 79.7 85 49.4
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 2.5e-13 79.7 85 49.4
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 4.3e-13 79.0 87 50.6
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 4.3e-13 79.0 87 50.6
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 4.3e-13 79.0 87 50.6
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 7.3e-13 78.2 48 72.9
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 1.2e-12 77.4 46 76.1
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 1.6e-12 77.0 87 49.4
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 1.9e-08 63.5 108 38.9
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 2.4e-08 63.2 58 62.1
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 2.4e-08 63.2 69 52.2
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 5.4e-08 62.0 75 53.3
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.0e-07 60.1 69 55.1
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.0e-07 60.1 69 55.1
Sabra11G0012500 Salix brachista HOM05D005411 ORTHO05D006463 2.7e-07 59.7 72 48.6
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 4.6e-07 58.9 58 53.4
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 1.7e-06 57.0 46 60.9
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 2.3e-06 56.6 63 50.8
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 3.0e-06 56.2 31 77.4
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 3.0e-06 56.2 31 77.4
Sabra05G0164800 Salix brachista HOM05D005411 ORTHO05D006463 3.9e-06 55.8 72 45.8


User provided reference genes

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