Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 4.2e-178 627.9 304 100.0
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 5.0e-115 418.3 222 87.8
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.6e-108 396.7 226 80.5
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 7.2e-106 387.9 224 78.6
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 9.5e-106 387.5 230 77.4
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 5.7e-103 378.3 225 80.4
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 9.8e-103 377.5 238 74.8
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.3e-102 377.1 230 75.2
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 2.2e-102 376.3 232 76.3
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 8.3e-102 374.4 224 76.8
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.4e-101 373.6 224 76.3
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.4e-101 373.6 246 72.4
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 1.4e-101 373.6 216 79.2
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 1.8e-101 373.2 224 76.8
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 3.2e-101 372.5 230 74.3
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.2e-101 372.5 232 75.0
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.6e-100 370.2 224 76.8
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 1.6e-100 370.2 224 76.3
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.7e-100 369.4 222 75.2
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 4.5e-100 368.6 239 75.7
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 5.9e-100 368.2 224 75.9
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 1.3e-99 367.1 224 76.3
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.7e-99 366.7 232 74.1
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.7e-99 366.7 221 75.6
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 3.9e-99 365.5 225 75.6
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.9e-98 363.2 223 75.8
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.9e-98 363.2 230 74.3
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 1.9e-98 363.2 235 69.8
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.5e-98 362.8 224 75.0
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 2.5e-98 362.8 224 74.6
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.6e-98 361.7 232 72.0
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 7.3e-98 361.3 237 72.2
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 7.3e-98 361.3 222 74.8
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 9.5e-98 360.9 211 77.3
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.2e-97 360.5 224 73.7
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 2.8e-97 359.4 223 75.3
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 2.8e-97 359.4 223 75.3
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 1.0e-96 357.5 233 73.0
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 8.9e-96 354.4 231 71.9
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 1.2e-95 354.0 224 73.7
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 1.5e-95 353.6 271 64.6
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.5e-95 353.6 259 65.3
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.5e-95 353.6 230 69.6
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.0e-95 353.2 238 70.6
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 3.4e-95 352.4 230 70.4
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.4e-95 352.4 232 70.7
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 5.8e-95 351.7 262 63.7
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.8e-95 351.7 232 70.7
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 7.5e-95 351.3 217 75.6
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 9.8e-95 350.9 222 72.5
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 1.3e-94 350.5 222 73.9
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 1.7e-94 350.1 221 71.0
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 1.7e-94 350.1 238 70.2
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.7e-94 350.1 220 73.6
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 1.7e-94 350.1 221 71.5
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 2.2e-94 349.7 238 70.6
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 2.9e-94 349.4 223 72.2
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 8.3e-94 347.8 216 73.1
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 8.3e-94 347.8 238 69.3
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 8.3e-94 347.8 222 69.4
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 1.1e-93 347.4 222 70.7
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 1.1e-93 347.4 222 69.4
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.1e-93 347.4 221 70.6
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.4e-93 347.1 238 69.7
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 1.4e-93 347.1 213 72.3
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.9e-93 346.7 230 68.7
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 1.9e-93 346.7 230 70.9
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 1.9e-93 346.7 220 71.8
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 5.4e-93 345.1 230 68.3
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 7.0e-93 344.7 264 62.5
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 7.0e-93 344.7 250 65.6
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 7.0e-93 344.7 234 67.5
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 1.2e-92 344.0 226 69.9
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 1.6e-92 343.6 225 68.4
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 1.6e-92 343.6 215 73.0
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.6e-92 343.6 221 70.6
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 2.0e-92 343.2 216 72.7
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 3.5e-92 342.4 226 69.5
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 6.0e-92 341.7 279 60.2
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 6.0e-92 341.7 256 63.3
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 7.8e-92 341.3 210 74.8
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.0e-91 340.9 212 71.7
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.3e-91 340.5 230 66.5
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 1.3e-91 340.5 222 70.3
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.7e-91 340.1 230 67.0
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.7e-91 340.1 230 69.1
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.7e-91 340.1 230 67.8
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 2.3e-91 339.7 224 71.4
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 2.3e-91 339.7 224 71.4
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 5.0e-91 338.6 213 71.8
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 5.0e-91 338.6 224 68.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 5.0e-91 338.6 222 68.5
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 6.6e-91 338.2 230 67.4
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 8.6e-91 337.8 256 62.1
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.1e-90 337.4 210 71.0
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 2.5e-90 336.3 225 68.9
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 2.5e-90 336.3 225 68.9
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 4.3e-90 335.5 230 68.7
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 4.3e-90 335.5 230 68.7
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 5.6e-90 335.1 224 68.3
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 3.6e-89 332.4 208 71.6
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.7e-89 332.0 230 65.2
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 4.7e-89 332.0 252 61.9
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.6e-87 326.2 224 69.6
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.2e-86 323.2 223 65.0
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 2.4e-85 319.7 223 64.6
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.5e-82 310.5 260 58.5
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 2.3e-80 303.1 178 80.3
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 6.8e-80 301.6 215 65.1
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 8.9e-80 301.2 188 72.9
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 2.2e-78 296.6 168 81.0
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 3.2e-77 292.7 188 72.3
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 2.1e-76 290.0 169 76.3
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 7.8e-76 288.1 169 75.7
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 7.8e-76 288.1 169 76.3
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.5e-74 283.9 230 60.0
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 8.1e-73 278.1 223 60.1
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 1.1e-72 277.7 220 59.1
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 4.6e-68 262.3 215 57.7
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.1e-67 258.8 223 58.7
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.5e-66 256.5 165 69.1
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 9.6e-66 254.6 197 56.9
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.4e-64 250.0 181 61.3
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 2.2e-62 243.4 225 49.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.3e-59 234.2 170 61.2
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 6.6e-59 231.9 128 79.7
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 7.3e-58 228.4 225 51.6
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 2.2e-54 216.9 207 51.2
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 6.4e-54 215.3 223 49.8
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.5e-50 204.1 130 73.8
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 2.0e-47 193.7 223 46.2
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 2.6e-47 193.4 126 72.2
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.2e-44 184.5 108 74.1
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.3e-42 176.4 220 40.9
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 5.7e-42 175.6 108 70.4
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 2.8e-41 173.3 128 58.6
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 4.1e-40 169.5 251 38.2
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 4.1e-40 169.5 177 52.5
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.6e-39 166.8 111 69.4
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.5e-37 160.2 252 38.5
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 2.9e-30 136.7 92 67.4
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 2.7e-28 130.2 79 74.7
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 6.3e-25 119.0 65 78.5
QL10p037628 Quercus lobata HOM05D000004 ORTHO05D000002 2.0e-23 114.0 67 82.1
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.5e-23 112.8 78 62.8
TAR625G1267 Trochodendron aralioides HOM05D001154 ORTHO05D001175 6.5e-22 109.0 59 88.1
TAR452G0006 Trochodendron aralioides HOM05D000004 ORTHO05D010212 2.5e-21 107.1 53 94.3
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.8e-19 100.9 82 57.3
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.7e-17 94.4 60 73.3
Sc10g0007080 Simmondsia chinensis HOM05D004915 ORTHO05D010212 3.3e-10 70.1 60 53.3
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 7.5e-10 68.9 187 27.8
SalBow4G0288 Salvia bowleyana HOM05D007958 ORTHO05D010212 1.6e-07 61.2 65 46.2
SalBow6G0870 Salvia bowleyana HOM05D007958 ORTHO05D010212 4.5e-07 59.7 72 44.4
SalBow1G4187 Salvia bowleyana HOM05D007958 ORTHO05D010212 5.9e-07 59.3 65 47.7
SalBow2G1205 Salvia bowleyana HOM05D007958 ORTHO05D010212 5.9e-07 59.3 65 47.7
SalBow2G2586 Salvia bowleyana HOM05D007958 ORTHO05D010212 7.7e-07 58.9 80 41.2
SalBow1G5250 Salvia bowleyana HOM05D007958 ORTHO05D010212 1.0e-06 58.5 66 43.9
SalBow8G4339 Salvia bowleyana HOM05D003746 ORTHO05D010212 1.0e-06 58.5 56 48.2
SalBow1G2585 Salvia bowleyana HOM05D007958 ORTHO05D010212 1.3e-06 58.2 62 48.4
SalBow1G3948 Salvia bowleyana HOM05D007958 ORTHO05D010212 1.3e-06 58.2 63 46.0
SalBow1G6195 Salvia bowleyana HOM05D007958 ORTHO05D010212 1.3e-06 58.2 63 46.0
SalBow1G2320 Salvia bowleyana HOM05D001856 ORTHO05D010212 1.7e-06 57.8 59 47.5
SalBow6G3125 Salvia bowleyana HOM05D007958 ORTHO05D010212 3.8e-06 56.6 64 43.8
SalBow6G0028 Salvia bowleyana HOM05D007958 ORTHO05D010212 5.0e-06 56.2 56 46.4
SalBow7G2932 Salvia bowleyana HOM05D007958 ORTHO05D010212 5.0e-06 56.2 63 42.9
SalBow6G5551 Salvia bowleyana HOM05D007958 ORTHO05D010212 8.5e-06 55.5 68 41.2


User provided reference genes

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