Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.6e-200 703.0 466 100.0
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.4e-153 546.2 467 71.5
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.8e-148 530.0 484 68.8
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 3.2e-145 519.2 507 66.1
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 4.2e-145 518.8 488 64.5
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 4.2e-145 518.8 486 69.5
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.7e-144 516.2 470 69.4
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.5e-142 509.6 489 72.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 2.5e-142 509.6 472 71.0
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 1.4e-140 503.8 479 64.3
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.5e-139 500.4 467 61.9
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 2.0e-139 500.0 471 65.4
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 3.4e-139 499.2 495 61.6
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.9e-138 496.1 490 64.3
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 4.9e-138 495.4 477 63.3
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 6.5e-138 495.0 472 59.3
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 8.4e-138 494.6 484 62.6
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 4.2e-137 492.3 478 62.1
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 1.2e-136 490.7 486 64.8
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.1e-136 490.0 470 64.3
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 2.7e-136 489.6 484 59.9
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 2.7e-136 489.6 486 61.7
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 7.9e-136 488.0 467 60.0
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.3e-135 487.3 492 64.8
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.8e-135 486.9 467 68.7
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 3.0e-135 486.1 487 66.9
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 3.9e-135 485.7 477 59.3
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.9e-135 485.7 467 71.1
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 5.1e-135 485.3 467 69.6
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 8.7e-135 484.6 469 65.7
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.5e-134 483.8 466 60.9
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.5e-134 483.8 475 61.1
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.5e-134 483.8 498 58.0
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 3.3e-134 482.6 468 64.5
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 3.7e-133 479.2 491 60.9
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-131 474.2 475 68.4
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.0e-131 473.4 472 67.2
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.6e-131 473.0 475 68.6
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 1.0e-130 471.1 469 63.8
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.9e-130 469.5 468 63.5
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 3.8e-130 469.2 467 61.5
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.8e-130 469.2 468 62.4
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 5.0e-130 468.8 468 63.5
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.2e-129 466.1 473 64.5
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.2e-129 466.1 467 67.5
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 5.5e-129 465.3 494 63.0
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 7.2e-129 464.9 467 57.2
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 9.3e-129 464.5 467 58.2
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 2.7e-128 463.0 496 60.9
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 4.6e-128 462.2 489 62.8
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 4.6e-128 462.2 476 55.9
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 4.6e-128 462.2 469 62.5
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.0e-127 461.1 478 65.1
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 3.9e-127 459.1 496 63.9
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.1e-127 458.8 476 59.5
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 6.7e-127 458.4 474 63.9
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.7e-127 458.4 483 57.1
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.9e-126 456.8 470 64.3
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.5e-126 456.4 474 62.7
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.3e-126 456.1 471 59.4
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 3.3e-126 456.1 503 63.8
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 7.4e-126 454.9 473 59.8
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.2e-125 453.4 473 62.8
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 8.2e-125 451.4 476 56.9
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.1e-124 451.1 475 60.0
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.4e-124 450.7 479 58.7
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 6.9e-124 448.4 475 61.1
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.9e-123 445.3 484 65.5
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 5.9e-123 445.3 468 60.3
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 1.0e-122 444.5 474 59.7
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.2e-122 443.4 475 59.6
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 2.9e-122 443.0 469 60.6
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 3.8e-122 442.6 472 59.5
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 5.0e-122 442.2 495 56.2
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 5.0e-122 442.2 479 67.2
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.5e-121 438.7 466 64.8
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 7.2e-121 438.3 494 57.9
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 2.7e-120 436.4 472 58.7
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 6.1e-120 435.3 474 64.8
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.4e-119 434.1 473 65.5
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 3.7e-117 426.0 470 57.4
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 3.7e-117 426.0 513 52.8
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.8e-117 425.6 486 62.6
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 3.1e-116 422.9 476 56.5
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.6e-115 419.9 468 55.3
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 5.9e-115 418.7 417 61.9
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 2.5e-113 413.3 428 62.1
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 2.5e-113 413.3 476 54.8
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 3.2e-113 412.9 472 60.4
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.0e-111 407.9 471 60.5
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.8e-111 407.1 475 57.7
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.3e-110 402.9 468 61.1
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 4.4e-110 402.5 471 59.2
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.3e-109 401.0 424 62.0
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 4.8e-109 399.1 467 52.5
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 3.5e-107 392.9 470 61.1
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 3.5e-107 392.9 470 61.1
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 4.5e-107 392.5 473 57.7
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 8.5e-106 388.3 467 59.7
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.7e-104 383.3 483 56.7
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.7e-101 372.9 471 56.7
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 4.8e-101 372.5 474 52.3
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.1e-100 371.3 474 52.3
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.0e-98 364.8 434 55.3
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.9e-98 363.2 469 55.9
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 9.8e-94 348.2 466 46.6
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.2e-93 347.1 547 46.1
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 2.8e-93 346.7 468 47.6
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.7e-93 346.3 477 49.5
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.5e-89 333.6 475 51.4
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.5e-89 333.6 475 51.4
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 3.6e-88 329.7 337 62.3
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 3.7e-85 319.7 374 60.2
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 3.4e-78 296.6 417 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 2.7e-75 287.0 393 52.4
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.1e-73 281.6 545 44.4
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 8.9e-71 271.9 478 38.9
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 8.6e-66 255.4 164 84.1
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 8.1e-64 248.8 464 37.5
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-62 245.0 464 37.5
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.5e-62 244.6 357 56.3
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 5.8e-62 242.7 464 37.1
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 9.2e-60 235.3 529 36.5
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.0e-58 231.9 396 51.8
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.9e-58 229.9 173 70.5
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 2.3e-55 220.7 118 91.5
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.6e-54 217.2 410 39.3
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 7.8e-51 205.7 465 36.6
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 1.3e-50 204.9 168 62.5
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 8.1e-48 195.7 431 45.2
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 5.2e-47 193.0 489 42.9
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 2.4e-44 184.1 560 36.8
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.7e-42 177.9 313 41.2
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.6e-42 176.0 329 38.9
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 8.7e-42 175.6 166 56.0
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 9.6e-41 172.2 94 89.4
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 1.6e-40 171.4 144 66.0
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 8.7e-34 149.1 172 41.3
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-29 135.2 130 60.0
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.4e-28 131.0 168 48.2
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.0e-26 125.6 302 33.8
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-23 114.8 73 78.1
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-23 114.8 362 31.5
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.6e-22 109.4 294 37.1
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.5e-20 103.2 73 71.2
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-19 102.1 102 55.9
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-19 100.9 158 41.8
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-17 94.4 73 67.1
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 4.3e-17 93.6 96 51.0
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.6e-17 92.4 75 68.0
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.7e-16 90.5 266 30.1
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.7e-16 90.5 80 61.2
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.6e-14 84.3 163 40.5
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 3.0e-10 70.9 41 70.7
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 1.5e-09 68.6 44 70.5
HPP92_006873 Vanilla planifolia HOM05D000450 ORTHO05D002608 1.6e-08 65.1 159 37.1
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 1.6e-08 65.1 41 75.6
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.8e-08 64.3 135 36.3
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 3.7e-08 63.9 41 68.3
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 8.2e-08 62.8 51 68.6
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 1.1e-07 62.4 55 56.4
HPP92_028506 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-07 62.0 38 84.2
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-07 61.6 156 34.6
BcaB08g34419 Brassica carinata HOM05D003551 ORTHO05D004869 3.4e-06 57.4 50 62.0
HPP92_026825 Vanilla planifolia HOM05D003551 ORTHO05D004343 4.5e-06 57.0 34 85.3


User provided reference genes

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